Saccharomyces paradoxus: SPAR_D04400
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Entry
SPAR_D04400 CDS
T08193
Name
(RefSeq) Prp28
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
spao
Saccharomyces paradoxus
Pathway
spao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAR_D04400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spao03041
]
SPAR_D04400
Enzymes [BR:
spao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPAR_D04400
Spliceosome [BR:
spao03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
SPAR_D04400
Complex C
U5 SnRNP specific factors
SPAR_D04400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
54629687
NCBI-ProteinID:
XP_033765473
UniProt:
A0A8B8UNY1
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All DBs
Position
IV:complement(917274..919040)
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AA seq
588 aa
AA seq
DB search
MARPIDVSQLIAGINKKRGLDRGTPGKVSKPKFLSKNERFKQERLEENEEDLKPAVGNIA
TVDVEEVNFRDDSFLNETNNKKKNSSKQNGSKFQFSWNESEDTLTGYDPIVSTKASDLLQ
KGKTPKDSAESSYMGKHWTEKSLHEMNERDWRILKEDYAIVTKGGAVQNPLRNWEELNII
PRDLLRVITQQLQFPSPTPIQRITIPNVCDAKQYRDFLGVASTGSGKTLAFVIPILIRMS
RSPPRPPSLKIMDGPKALILAPTRELVQQIQTETQKVTKLWSKENNYDCRVISIVGGHSL
EEISFSLSEGCDILVATPGRLIDSLENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILT
KVDVNADPAVNRQTLMFTATMTPVIEKIAAGYMKKPVYATIGVDTGSDPLIRQVVEYADN
DEDKFKKLKSAVIKYEPPIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREYSL
QLFRTNKVQIMIATNVAARGLDIPNVSLVVNFQISKKIDDYIHRIGRTGRAAKEGTAISF
VSGAEDESLIRDLHKYVRKHDPLNSNIFSDVVKNKYNVGKQAVNEVIY
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaccgattgatgttagccagctgattgctggtataaacaagaagagagggcta
gataggggtacgccaggtaaagtcagcaaacctaagtttctgagtaaaaatgaaagattc
aagcaggagcgtctggaggagaacgaagaggatttgaaacctgccgtgggtaacattgct
acagtagatgttgaagaggtgaacttcagagacgacagttttctcaatgaaacaaataat
aagaaaaagaattcatcaaagcaaaatggttccaaatttcaattttcttggaatgaaagc
gaagatactctcactggttacgatcctattgtttcgactaaagctagcgatttgctgcaa
aaagggaagactcctaaggattctgcagaatcttcctatatgggtaagcattggaccgag
aagtctttgcatgaaatgaatgagagagattggagaatactgaaagaggactacgctatt
gttacaaaaggtggggcagtacaaaatccattgaggaattgggaagaacttaatattata
ccaagggatttgttacgtgtaattacacagcaacttcaatttccttcaccgacacctatt
caaagaattactatcccaaacgtttgcgatgcaaaacaatatagagatttccttggtgtt
gcgtctacaggctcaggtaagactttagcctttgtaatacctattctaatcaggatgagt
agatcacctccgaggccaccatctttaaagatcatggatggccccaaagcattaattcta
gcaccaacaagagaactggtacaacaaattcaaacagaaacacaaaaggtcacaaaatta
tggtccaaagagaataattatgactgtagagtaatttctattgtaggtggacactcgttg
gaggaaatctcattctctctatcggagggctgtgatattctggtggctacgccagggcgt
ttgattgactctttagaaaatcatttactagtaatgaaacaggtggagacattggtgcta
gatgaagctgataaaatgattgatttaggttttgaagaccaagtaactaacattttaaca
aaagttgatgtaaatgctgatcccgcggtgaacagacaaaccttgatgtttacggctaca
atgacccccgtaatagaaaaaattgcagcagggtacatgaaaaagcctgtttatgcaacc
ataggggttgatacaggctctgatcctttgatacgacaggttgtggaatatgctgacaat
gatgaagataaattcaagaagttgaagtcagctgtcattaaatatgaaccaccaataata
atattcattaattacaaacagactgctgattggttagcggaaaaatttcagaaggaaacc
aacatgaaggtgaccattttacatggttcgaaatcccaagagcaaagagaatattccttg
cagttatttcgcaccaacaaagtccaaattatgatcgcaactaatgttgctgcaagagga
ttagatattcctaacgtttcattagtagtcaatttccagatttccaaaaaaatagatgat
tacattcatagaattggtagaacaggtcgtgccgcaaaggagggcaccgctatctcattt
gttagtggtgctgaggatgaatcactgatacgtgaccttcacaaatatgtcagaaagcat
gatcccttaaacagcaatattttttccgatgttgtaaaaaacaaatacaacgtcggtaaa
caggccgttaatgaggttatatattaa
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