KEGG   Saccharomyces paradoxus: SPAR_D06030
Entry
SPAR_D06030       CDS       T08193                                 
Name
(RefSeq) Syf1
  KO
K12867  pre-mRNA-splicing factor SYF1
Organism
spao  Saccharomyces paradoxus
Pathway
spao03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPAR_D06030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_D06030
   03041 Spliceosome [BR:spao03041]
    SPAR_D06030
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     SPAR_D06030
Spliceosome [BR:spao03041]
 Complex B
  Other components
   Prp19-related factors
    SPAR_D06030
 Complex C
    SPAR_D06030
SSDB
Motif
Pfam: HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_C Suf DUF3579
Other DBs
NCBI-GeneID: 54629850
NCBI-ProteinID: XP_033765636
UniProt: A0A8B8UPP8
LinkDB
Position
IV:1245734..1248319
AA seq 861 aa
MSHIDIRAMKGVMTNVDEIIRNDEDVAFEYEIQKTPQNILTWKRYLEYWKEEGRTDQQIR
WLYERFCSQFVTDTSIWEDYIQWESTREVVETSRIFWLFQRCLKSCVEDCDRICSSYLEL
AIEQHDLSMIRHALDLSLTRVEREMHPKIWDPVLKFMEKKVLPLTQLDSTQEDEEESTDE
AELINILLVKGLAKIGLINEELSRSESRGDIWSSQLLERYLKVAPQQKQNELLATLAKTR
DNVTIMSVYQRYMSQDGSSERYLPSSKLTFELNLNYLISLDKLGLDDQYEEFMSQMNGIY
ADNWVYLTLSLAKYYISRGRLDSCGDLLKKSLQQTLSYSDFDRIYNFYLLFEQQCSQFIL
EELKENNSKSFKQEHWAEKLQGHMATFESLINLHDIYLNDVSLRQDPNLVETWMKRVSLQ
KTSAEKCNIYSEAILKIDPRKVSTPGSFGKLWCAYGDVYWRANATSTARELWTQSLKVPY
PYIEDLEEIYLNWADRELDEEGIERAVSVLEDALHIPKNTGILLEKYNNGHRKVPAQTIL
FNSLRIWSKYIDFLEAYCPNDANSSNRIFNKTKMAYNSVIDLKLITPAMAENFALLLQNH
HEVVESFQVYEKTIPLFPPEIQYELWIEYLEVATSHRLSSLSPEHIRFLFEKALGNLCSN
GIDCKTIFIAYSVFEQRISGLVRRCIEILHKGAIQDAVSVSTHLESRLQLWRMCISKAES
TLGPSVARELYQECIQMLPNPKAVEFVIKFSNFESSIGETIRAREILAYGAKLLPPSRNA
ELWDSFENFELKHGDKETYKDMLKMKKLLDSDMVIDSEGVSQEEGNINFVAAAASHAPHS
HAVIQPTSSRSINPDEIELDI
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgtcccatattgatatacgtgcaatgaagggagtaatgacaaacgtcgatgagattata
aggaatgatgaagatgtggcttttgagtacgaaatacaaaagacaccgcagaatatccta
acatggaaaagatatctcgaatattggaaagaggagggaaggactgaccaacagattagg
tggttgtatgaaagattttgttcgcaatttgtaacagatacaagtatatgggaagattac
atacagtgggaatcaacaagggaagtagtcgaaacttcacgtattttctggctttttcaa
aggtgcctcaagagctgtgtagaagattgtgataggatatgttcgtcctatttagaattg
gccattgaacaacatgacttgtcgatgataaggcatgctttagatttatctttgacaaga
gtagagagagaaatgcatccgaaaatttgggatcctgtcttaaaatttatggaaaagaaa
gttttacctttaacgcaattggattcaactcaagaagatgaagaagaaagtactgatgaa
gctgaattgataaatatacttttagtaaagggcctcgcgaagataggcctcattaacgag
gaactcagtagaagcgaaagcagaggtgacatttggtcgtcacagcttttagaaagatac
ctaaaagtggcccctcagcaaaaacaaaatgaactgctcgcaactcttgcgaaaactaga
gacaatgttaccatcatgtcagtctaccaaagatatatgtcacaagacggaagcagtgaa
aggtatctgcctagttcaaaactaacatttgaattaaatctcaattatttgattagcctg
gacaaactaggtctagacgatcaatatgaggaattcatgagtcaaatgaatggcatatat
gccgataactgggtctacttaaccctatcacttgccaaatattatatctctcgcggaagg
ctcgatagttgcggtgatttgctgaagaaaagcttgcagcaaacacttagttacagtgat
tttgatcgtatttataatttctatttgctctttgagcaacagtgctctcagtttattcta
gaagaactaaaagaaaataacagcaaatcctttaagcaagaacattgggctgaaaaacta
caaggccatatggcgacatttgaatccttaattaacttacatgatatctatttgaatgat
gtctcactaaggcaagaccccaacttggtggaaacgtggatgaagagggtgtctctacag
aaaacatctgcggaaaagtgtaacatatattcagaagctatactgaaaattgatccccga
aaagttagtacgcctggctctttcggtaaactctggtgtgcatatggagatgtgtattgg
agagcaaatgcaactagcacagcgagggagttatggacacagtctttgaaggtaccgtat
ccttatatagaagatttggaagagatttacctaaactgggccgacagagaattagatgaa
gaagggatcgaaagagcagtttccgtccttgaagatgcattacatataccgaaaaataca
ggtattttgcttgagaaatacaataacgggcataggaaagtgcctgctcaaaccatccta
tttaactcactacgtatttggtccaaatacattgattttctggaggcctactgcccaaat
gatgcaaactcctctaatagaatattcaataaaacgaaaatggcatacaatagtgttatt
gatttgaagttgattactccagcgatggcagaaaattttgcgttgctcttacagaatcat
cacgaagtcgtagaaagtttccaggtgtatgagaaaacgatccctctgttccccccagaa
attcaatacgaattatggattgagtatttagaagtagcgacatcgcaccggttgtcatca
ttgagtcccgaacacattagattcttgtttgagaaagcccttgggaacctatgttcaaat
ggcatagactgtaagacgatttttattgcttatagcgtatttgagcaaaggataagtggt
ctggttaggaggtgcattgagatcttacataaaggtgctatacaagatgctgttagtgtg
agcacgcacctcgaaagcagattgcaactgtggagaatgtgtatttccaaggccgaatcc
actctgggtccatcagtagccagggaactataccaagagtgtatccaaatgttgccaaat
cctaaagctgttgagtttgtgattaaattttcaaatttcgaaagctctataggagaaact
attcgagcacgtgaaatccttgcctatggtgcgaagcttcttcctccatccagaaatgct
gaattatgggatagctttgaaaatttcgagttaaaacacggcgataaggaaacctacaaa
gacatgttaaagatgaagaagctattggattccgacatggtaattgattccgagggcgtt
agccaggaggaaggaaacattaacttcgtggcagcagcagcctcgcatgctccccactcg
cacgctgttatccaaccaacctcttcgcgttcaatcaatccagatgaaatagaactagat
atatga

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