KEGG   Saccharomyces paradoxus: SPAR_E02210
Entry
SPAR_E02210       CDS       T08193                                 
Name
(RefSeq) Lsm5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
spao  Saccharomyces paradoxus
Pathway
spao03018  RNA degradation
spao03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPAR_E02210
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAR_E02210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_E02210
   03041 Spliceosome [BR:spao03041]
    SPAR_E02210
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPAR_E02210
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SPAR_E02210
Spliceosome [BR:spao03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    SPAR_E02210
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 54630206
NCBI-ProteinID: XP_033765964
UniProt: A0A8B8UQC6
LinkDB
Position
V:<458581..>458862
AA seq 93 aa
MSLPEILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLINPEDESK
NEEVMQHHGRMLLSGNNIAILVPGGKKTPTQAL
NT seq 282 nt   +upstreamnt  +downstreamnt
atgagtctaccggagatcttgcctttggaggtcatagacaaaacaattaaccagaaagtg
ctgattgtgctacaatcgaaccgcgagttcgagggcacactggtcggtttcgacgatttc
gtcaatgtcatactagaggacgccgtcgagtggcttatcaaccctgaggacgagagtaaa
aatgaggaagtaatgcagcaccatggcagaatgcttttgagcggcaacaacatcgccatc
cttgtgccaggcggcaaaaagacccctacgcaggcgttataa

DBGET integrated database retrieval system