Saccharomyces paradoxus: SPAR_E02210
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Entry
SPAR_E02210 CDS
T08193
Name
(RefSeq) Lsm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
spao
Saccharomyces paradoxus
Pathway
spao03018
RNA degradation
spao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAR_E02210
09123 Folding, sorting and degradation
03018 RNA degradation
SPAR_E02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_E02210
03041 Spliceosome [BR:
spao03041
]
SPAR_E02210
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPAR_E02210
mRNA degradation factors
5'-3' decay
Lsm complex
SPAR_E02210
Spliceosome [BR:
spao03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SPAR_E02210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
54630206
NCBI-ProteinID:
XP_033765964
UniProt:
A0A8B8UQC6
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Position
V:<458581..>458862
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AA seq
93 aa
AA seq
DB search
MSLPEILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLINPEDESK
NEEVMQHHGRMLLSGNNIAILVPGGKKTPTQAL
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgagtctaccggagatcttgcctttggaggtcatagacaaaacaattaaccagaaagtg
ctgattgtgctacaatcgaaccgcgagttcgagggcacactggtcggtttcgacgatttc
gtcaatgtcatactagaggacgccgtcgagtggcttatcaaccctgaggacgagagtaaa
aatgaggaagtaatgcagcaccatggcagaatgcttttgagcggcaacaacatcgccatc
cttgtgccaggcggcaaaaagacccctacgcaggcgttataa
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