Saccharomyces paradoxus: SPAR_F00590
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Entry
SPAR_F00590 CDS
T08193
Name
(RefSeq) Spb4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
spao
Saccharomyces paradoxus
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spao03009
]
SPAR_F00590
Enzymes [BR:
spao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPAR_F00590
Ribosome biogenesis [BR:
spao03009
]
Eukaryotic type
Pre-60S particles
Helicases
SPAR_F00590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTT_SPB4
CTE_SPB4
ResIII
ERCC3_RAD25_C
Cas3-like_C_2
MICSWaP
Motif
Other DBs
NCBI-GeneID:
54630325
NCBI-ProteinID:
XP_033766063
UniProt:
A0A8B8UQP2
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Position
VI:complement(158989..160809)
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AA seq
606 aa
AA seq
DB search
MSKSLEWENLEFSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAA
FVIPILERVAKEEANTSKFKKAHFHSLIIAPTRELSRQIESVFLSFLEHYPSDLFPIKCQ
LLIGTNEATVRDDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVILDEADRLLDV
SFIKDIEKILRLLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNY
CVVNPVEKLQLLVSILNNYKFKKCIVYFPTCVSVSYFYSFIQHLAKKNILVNEVEVFSLH
GKLQTSARTKTLAAFTDSLGNSVLFTTDVAARGIDIPDVDLVIQLDPPTNSDMFMHRCGR
TGRANRVGKAITFLNKGREEDFVPFMLVKNVELEEFDLKVKGITTNFYENFRDWIFEDRD
RFDKGVKAYVAFIKYYSNHSATSIFRLQSLDYVGIAKMYGLFRLPRMPEITKYLITEKQE
GVFPGNWLVDPPVNMDEYRYKDKKREKERQETLKNINLINDKKKIKSELKKKNLAWSDKT
STKERKLERKEKMSLKRRAIEEELKAEELNENAEEEHIQEDWKEIVLQNKRKKVSSKTIQ
GSFDGL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagtcattagaatgggaaaatctcgagttttctctacttccttggataaggaca
ggattggatgtaatgggttttgagaccatgaccccagttcaagcatcaacaattcccatg
cttgctggcaacaaggatgtggtagttgattctgtaacaggctcaggtaagaccgcagcg
tttgttatacctatactagagagagtcgcaaaggaagaagcaaatacatcaaagttcaag
aaagcacattttcattcattaattattgctccgacaagagaattgtctcgccaaattgag
tctgtatttttatcattcctggaacactatccttctgacttgttccctatcaaatgccaa
ctcctgattggtaccaatgaagccacagtcagagacgatgtgagtaatttcctgcggaat
agacctcagattctgattggaacacctggtagagttttggactttctgcaaatgccagca
gtaaaaacgtcagcatgtagtatggtgattttggatgaagcggataggttgctagatgtg
agttttatcaaggatattgagaaaatcctgaggctattgcctaagcaaagaagaacgggt
ctattctccgcaactatgcgtagcgcgggatcagatatctttaagacagggctcagaaat
cctgtcaggattactgtaaactctaagaatcaggcgccttcttctttgaaattgaattac
tgtgtcgtgaatcctgtcgaaaaactgcaacttttagtcagcattttgaataactacaag
ttcaagaaatgtattgtatattttccaacatgtgtatcagtctcctatttctactcattt
attcaacatttggcaaagaaaaacatcctcgtcaatgaagtagaagtattttccttacat
ggaaaactacaaacgtcagcaagaacaaagaccctagcagcatttaccgattcgctaggt
aattccgtgttattcactacggatgtagctgctagaggtattgatatacccgacgttgat
cttgtcattcagcttgatcctcctacaaattctgatatgttcatgcatagatgtggtaga
actggtagagcaaatagggtgggtaaagcaatcacatttcttaataaaggcagagaagag
gactttgttcctttcatgctagtcaaaaatgtggaacttgaagaatttgatttgaaagta
aagggcattacaacaaacttttacgaaaactttagagattggatattcgaagatagggat
agatttgacaagggtgttaaagcatatgttgccttcattaaatattattcaaaccattcc
gcaacttcaatttttagacttcagtcgttagattatgttggtattgcaaaaatgtacggt
cttttccgcctacctagaatgcctgagataacaaagtacttaatcactgaaaagcaagaa
ggggttttcccagggaattggctggtagatcccccagttaacatggatgaatatagatac
aaggacaaaaaacgtgaaaaggagagacaggaaacgctgaaaaatataaatctgattaat
gacaagaagaagataaaaagtgagttgaagaagaagaatttagcttggtcagataaaaca
tcgacaaaagaacgaaagctcgaaaggaaggaaaagatgagtttaaaaaggagggccata
gaagaagaattgaaagctgaagaactcaatgaaaatgctgaggaagagcatattcaagag
gattggaaagaaattgttttacagaataagcggaagaaagtttccagcaaaaccatccag
ggtagttttgacggcttataa
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