Saccharomyces paradoxus: SPAR_G01280
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Entry
SPAR_G01280 CDS
T08193
Name
(RefSeq) Prp43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
spao
Saccharomyces paradoxus
Pathway
spao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAR_G01280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spao03041
]
SPAR_G01280
03009 Ribosome biogenesis [BR:
spao03009
]
SPAR_G01280
Enzymes [BR:
spao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPAR_G01280
Spliceosome [BR:
spao03041
]
Complex A
U2 snRNP components
U2 related factors
SPAR_G01280
Complex B
SPAR_G01280
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
SPAR_G01280
Ribosome biogenesis [BR:
spao03009
]
Eukaryotic type
90S particles
Helicases
SPAR_G01280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_23
ResIII
AAA_7
T2SSE
AAA_30
ABC_tran
Motif
Other DBs
NCBI-GeneID:
54630522
NCBI-ProteinID:
XP_033766250
UniProt:
A0A8B8UR34
LinkDB
All DBs
Position
VII:complement(279881..282184)
Genome browser
AA seq
767 aa
AA seq
DB search
MGSKRRFSSEHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLVHHDAGEFKGLERHHTTA
EQAQKLEDGKVNPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGS
GKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN
KTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVRRRPD
LKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHAT
EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPA
PESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKAS
AQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF
DFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQ
EILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHGFKSDEAYEYGIH
KWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQV
AKKRSGAKGYITVKDNQDVLIHPSTVLGHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIE
IAPAYYDLNNFQKGDVKLSLERIKEKVDRLNELKQDKTKKKSKHSKK
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggttccaaaagaagattctcgtccgaacacccagatccagttgagacttctattcct
gagcaggccgccgagattgcggaagaattatccaaacaacatcctcttccatccgaagaa
ccgctagtgcatcatgatgccggtgaattcaagggcttagaacgccaccatactacggca
gaacaggctcaaaaacttgaagatggaaaggtaaatccatttacaggtagagagtttaca
ccaaaatatgttgatatcttaaaaattagaagagaactcccagtacatgctcagagagat
gaatttttgaaactttatcaaaacaaccaaattatggtttttgttggtgaaactggttcc
ggtaagacgacacaaattcctcaattcgtgttattcgatgaaatgccacacttagagaac
actcaagtcgcatgtacccaacctcgtcgtgtcgccgcaatgtctgttgcacaaagagtc
gccgaggaaatggatgtcaagttgggtgaagaagttggttactctatcagattcgaaaat
aaaacttctaataagacgatattgaagtatatgactgatggtatgctgttgagggaggca
atggaggaccatgatttgtcgcgttattcatgcatcattttggatgaagcgcacgaacgt
acactagctaccgatattttgatgggtcttttgaagcaagtagtcaggagaagacctgat
ttgaagatcatcattatgtccgccactctggatgcggagaaatttcaacgctacttcaat
gacgccccattacttgccgttccgggcagaacatacccagttgagctatattatacgccg
gaatttcaaagagactatttagattctgccattcgtactgttttacaaattcatgctact
gaagaggctggtgatattctgttatttttaactggtgaagatgaaattgaagatgctgtc
agaaagatttctttagaaggtgatcaattggttagagaagagggatgcggacctttatct
gtatacccgctatatggttcattgccaccacatcaacagcaaagaatctttgagcctgct
ccagagtcacataatggcaggccaggcaggaaagtcgttatctccactaacattgctgaa
acttcgttaacaattgacggtattgtctacgtcgttgacccagggttttcaaagcagaag
gtttacaatccgagaattagagttgagtctttactggtttcccctatctccaaggcttct
gcccaacaaagagctggtcgtgctggtcgtacaaggcccggtaaatgtttcagattatac
actgaagaggcattccaaaaggaactgatagaacaaagttatccagaaattttacgttct
aatttatcttccaccgtcttagaactaaagaaattaggtattgatgacttggtccatttc
gactttatggatccacctgctccggaaacaatgatgagagctcttgaagaactaaattat
ttggcatgtctagacgacgaaggtaacttaacacctctaggtagactggcatcccagttc
cccctagatcctatgctggcagtgatgctaattgggtcctttgagttccaatgttctcaa
gaaatattgactatagtggccatgctatcggtaccaaatgtatttattcgtccaacaaag
gacaagaaacgagcagacgatgccaagaatatcttcgctcatccagatggtgatcatatc
actttactaaatgtatatcatgggttcaaatcagatgaagcttatgaatatggtatccat
aagtggtgccgtgaccactacctaaactacaggtcactttccgctgctgataatatccgt
tcccaattagaaagattaatgaaccgttacaacctagaattaaacactacagactacgaa
agccctaaatactttgacaacattagaaaggctcttgcctctgggttctttatgcaagta
gcaaagaaaagatcaggtgccaaaggttacattacagtgaaagataatcaagacgttctg
atccatcctagtacagtccttggccacgacgcagaatgggtcatttacaatgaatttgta
ctcacgtcgaagaattatataagaactgtgacctcagttaggcccgaatggcttattgaa
atagcccctgcatactacgacttgaacaatttccaaaaaggtgatgtcaaattatcgttg
gaaaggatcaaggaaaaagttgatagattaaacgagttgaaacaagataaaactaaaaag
aagagtaaacactctaagaaatag
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