Saccharomyces paradoxus: SPAR_G02950
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Entry
SPAR_G02950 CDS
T08193
Name
(RefSeq) Upf3
KO
K14328
regulator of nonsense transcripts 3
Organism
spao
Saccharomyces paradoxus
Pathway
spao03013
Nucleocytoplasmic transport
spao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SPAR_G02950
03015 mRNA surveillance pathway
SPAR_G02950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_G02950
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SPAR_G02950
mRNA cycle factors
P-body specific factors
SPAR_G02950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
54630689
NCBI-ProteinID:
XP_033766417
UniProt:
A0A8B8URK9
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Position
VII:<619635..>620795
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AA seq
386 aa
AA seq
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MSNVAGEVKNSEGKKKNRGSRYHNSRNRGKNKNEASDTKKNEAKVNNNAAHNNSKGRRSN
KKRNREHYNYKRRAKSGKPTENEGFKLVIRLLPPNLTADEFFAILREKSSDGDEKKDIQD
NLKYSDWCFFEGHYSSKVFKNSTYSRCNFLFENLSDLERCATFINTCKFIDNKDNVTIPD
VKLSPYVKKFNQISKKDSALEGTIEEDEIFKTFMNSMKQLNENDDYSFQDFSVLKSLEKE
FSKSIELENKIAERTERVLTELVGTGDKVKNKNKKKKNKSNKKKFKDEEGTTKVSKKKRN
RGKKKRDDREKSSIPKTKNSNVVIIEEAGKEVLKQRKKKMLLQEKLKISNSSQSQSPSAQ
AQPSFQPKENLSAGRVKILHRDGTKK
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgtggctggagaagtgaagaatagtgaagggaaaaagaaaaacagaggaagt
aggtaccacaacagtagaaatagaggaaaaaataaaaatgaagcgtcagacactaaaaag
aatgaggctaaggttaataataatgctgctcataacaatagcaaaggcaggagaagtaac
aagaaaaggaacagagagcattataactataaaagaagagctaaatcgggcaaaccaacc
gagaatgaaggattcaagcttgttattagattactacctccaaatttgactgcagatgaa
ttctttgccattctgcgagaaaagagtagcgatggtgatgaaaagaaagatatccaggat
aacctcaagtacagtgactggtgtttttttgaaggtcattattctagtaaagtattcaag
aactcgacatattctagatgcaattttctgttcgagaacttatcagacctagaaagatgc
gcaacttttatcaatacttgtaagttcattgataataaggataatgttacaatcccagat
gtgaaactgtcaccttacgtaaagaaatttaatcaaatatcgaaaaaagattctgcgctg
gagggaacaattgaagaagatgaaatttttaaaacatttatgaattcaatgaaacagcta
aacgaaaatgatgactactcattccaagatttcagcgttttgaagtccctagaaaaggaa
ttctcaaaaagtatagaattagaaaataagatagcagaaagaacagaaagagtattaaca
gagctggttggcactggcgataaggttaagaataagaacaaaaagaagaaaaataaaagt
aataaaaaaaaattcaaagacgaggaaggaaccactaaggtatcaaagaaaaaaaggaac
aggggtaaaaagaagcgcgatgatcgtgaaaagagcagcattcctaagactaagaacagc
aatgtcgttattatcgaggaagcaggtaaagaggttttaaaacaaaggaagaagaaaatg
cttttgcaagaaaagttaaaaatatcaaactcctcccagtctcagtcaccatccgctcaa
gctcagccgtcgttccaacctaaagaaaacctttccgcaggacgggtaaaaattttacat
cgcgatggtactaagaagtag
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