KEGG   Saccharomyces paradoxus: SPAR_G02950
Entry
SPAR_G02950       CDS       T08193                                 
Name
(RefSeq) Upf3
  KO
K14328  regulator of nonsense transcripts 3
Organism
spao  Saccharomyces paradoxus
Pathway
spao03013  Nucleocytoplasmic transport
spao03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPAR_G02950
   03015 mRNA surveillance pathway
    SPAR_G02950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_G02950
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     SPAR_G02950
   mRNA cycle factors
    P-body specific factors
     SPAR_G02950
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 54630689
NCBI-ProteinID: XP_033766417
UniProt: A0A8B8URK9
LinkDB
Position
VII:<619635..>620795
AA seq 386 aa
MSNVAGEVKNSEGKKKNRGSRYHNSRNRGKNKNEASDTKKNEAKVNNNAAHNNSKGRRSN
KKRNREHYNYKRRAKSGKPTENEGFKLVIRLLPPNLTADEFFAILREKSSDGDEKKDIQD
NLKYSDWCFFEGHYSSKVFKNSTYSRCNFLFENLSDLERCATFINTCKFIDNKDNVTIPD
VKLSPYVKKFNQISKKDSALEGTIEEDEIFKTFMNSMKQLNENDDYSFQDFSVLKSLEKE
FSKSIELENKIAERTERVLTELVGTGDKVKNKNKKKKNKSNKKKFKDEEGTTKVSKKKRN
RGKKKRDDREKSSIPKTKNSNVVIIEEAGKEVLKQRKKKMLLQEKLKISNSSQSQSPSAQ
AQPSFQPKENLSAGRVKILHRDGTKK
NT seq 1161 nt   +upstreamnt  +downstreamnt
atgagcaatgtggctggagaagtgaagaatagtgaagggaaaaagaaaaacagaggaagt
aggtaccacaacagtagaaatagaggaaaaaataaaaatgaagcgtcagacactaaaaag
aatgaggctaaggttaataataatgctgctcataacaatagcaaaggcaggagaagtaac
aagaaaaggaacagagagcattataactataaaagaagagctaaatcgggcaaaccaacc
gagaatgaaggattcaagcttgttattagattactacctccaaatttgactgcagatgaa
ttctttgccattctgcgagaaaagagtagcgatggtgatgaaaagaaagatatccaggat
aacctcaagtacagtgactggtgtttttttgaaggtcattattctagtaaagtattcaag
aactcgacatattctagatgcaattttctgttcgagaacttatcagacctagaaagatgc
gcaacttttatcaatacttgtaagttcattgataataaggataatgttacaatcccagat
gtgaaactgtcaccttacgtaaagaaatttaatcaaatatcgaaaaaagattctgcgctg
gagggaacaattgaagaagatgaaatttttaaaacatttatgaattcaatgaaacagcta
aacgaaaatgatgactactcattccaagatttcagcgttttgaagtccctagaaaaggaa
ttctcaaaaagtatagaattagaaaataagatagcagaaagaacagaaagagtattaaca
gagctggttggcactggcgataaggttaagaataagaacaaaaagaagaaaaataaaagt
aataaaaaaaaattcaaagacgaggaaggaaccactaaggtatcaaagaaaaaaaggaac
aggggtaaaaagaagcgcgatgatcgtgaaaagagcagcattcctaagactaagaacagc
aatgtcgttattatcgaggaagcaggtaaagaggttttaaaacaaaggaagaagaaaatg
cttttgcaagaaaagttaaaaatatcaaactcctcccagtctcagtcaccatccgctcaa
gctcagccgtcgttccaacctaaagaaaacctttccgcaggacgggtaaaaattttacat
cgcgatggtactaagaagtag

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