KEGG   Saccharomyces paradoxus: SPAR_H01100
Entry
SPAR_H01100       CDS       T08193                                 
Name
(RefSeq) Rrp4
  KO
K03679  exosome complex component RRP4
Organism
spao  Saccharomyces paradoxus
Pathway
spao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAR_H01100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_H01100
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SPAR_H01100
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SPAR_H01100
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 ECR1_N_2 RRP40_S1
Other DBs
NCBI-GeneID: 54631046
NCBI-ProteinID: XP_033766738
UniProt: A0A8B8USM9
LinkDB
Position
VIII:complement(218539..219618)
AA seq 359 aa
MSEVITITKRNGAFQNSSNLSYNNSGISDDEDDEQDIYMRDVNSASKDESDSQIVTPGEL
VTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVG
NKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDG
SASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQMD
LARDTPSANNSASSKSPGPTGAVSLNPSITRLEEESSWQIYSDENDPLISNNIRQAICRY
ANVIKALAFCEIGITQQRIVSAYEASMVYSNIGELIEKNVMESIGSDILTAEKMRGNGN
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgtctgaagttatcacaattaccaagcggaacggtgcctttcaaaattcatctaacctg
tcctataacaactcagggatatcagatgacgaagacgatgaacaagatatatatatgcgg
gatgttaactcagcttctaaagatgagtctgattctcaaattgtgacaccaggtgaactg
gtcactgacgaccctatctggatgagaggtcacggtacgtattttcttgataatatgact
tactcctccgttgccggtaccgtatcgcgtgtcaataggctgctatcggttattccattg
aaaggccgttatgctccagagaccggtgatcacgtcgtaggaagaattgctgaagtggga
aataagagatggaaagtggacattggcggtaagcaacatgcagtgcttatgttaggctct
gtgaatttgccaggtggtattctaagaagaaaatctgaaagtgatgaactgcaaatgaga
agcttcctcaaagaaggtgatctactgaatgcagaagttcagtcattattccaagatggt
agtgcatccctacacaccagatctctaaagtatgggaagttaagaaatggtatgttttgc
caagttccgagttctttaatcgtcagagccaagaaccatactcataatttgcccggcaac
ataaccgtggttctcggagtcaatggttacatatggttaaggaaaacatctcagatggat
ttagcaagggatacgccgtccgcgaacaacagcgcctcaagtaaatcgcctgggcctact
ggtgcagtatcattgaatccctcaatcacaagactagaagaagaatcttcatggcaaata
tactccgacgaaaacgaccctttgatatcgaacaacatacgacaagcaatttgccgatat
gcgaacgtgataaaagcgttggcgttctgcgaaattggcatcactcaacagcgtatagtg
agcgcttacgaagctagtatggtctactcaaatataggtgaactgattgagaaaaacgta
atggaatccataggcagtgatattctaaccgccgaaaaaatgagaggtaacggcaactaa

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