Saccharomyces paradoxus: SPAR_H01100
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Entry
SPAR_H01100 CDS
T08193
Name
(RefSeq) Rrp4
KO
K03679
exosome complex component RRP4
Organism
spao
Saccharomyces paradoxus
Pathway
spao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAR_H01100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_H01100
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SPAR_H01100
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SPAR_H01100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
54631046
NCBI-ProteinID:
XP_033766738
UniProt:
A0A8B8USM9
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Position
VIII:complement(218539..219618)
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AA seq
359 aa
AA seq
DB search
MSEVITITKRNGAFQNSSNLSYNNSGISDDEDDEQDIYMRDVNSASKDESDSQIVTPGEL
VTDDPIWMRGHGTYFLDNMTYSSVAGTVSRVNRLLSVIPLKGRYAPETGDHVVGRIAEVG
NKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSFLKEGDLLNAEVQSLFQDG
SASLHTRSLKYGKLRNGMFCQVPSSLIVRAKNHTHNLPGNITVVLGVNGYIWLRKTSQMD
LARDTPSANNSASSKSPGPTGAVSLNPSITRLEEESSWQIYSDENDPLISNNIRQAICRY
ANVIKALAFCEIGITQQRIVSAYEASMVYSNIGELIEKNVMESIGSDILTAEKMRGNGN
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagttatcacaattaccaagcggaacggtgcctttcaaaattcatctaacctg
tcctataacaactcagggatatcagatgacgaagacgatgaacaagatatatatatgcgg
gatgttaactcagcttctaaagatgagtctgattctcaaattgtgacaccaggtgaactg
gtcactgacgaccctatctggatgagaggtcacggtacgtattttcttgataatatgact
tactcctccgttgccggtaccgtatcgcgtgtcaataggctgctatcggttattccattg
aaaggccgttatgctccagagaccggtgatcacgtcgtaggaagaattgctgaagtggga
aataagagatggaaagtggacattggcggtaagcaacatgcagtgcttatgttaggctct
gtgaatttgccaggtggtattctaagaagaaaatctgaaagtgatgaactgcaaatgaga
agcttcctcaaagaaggtgatctactgaatgcagaagttcagtcattattccaagatggt
agtgcatccctacacaccagatctctaaagtatgggaagttaagaaatggtatgttttgc
caagttccgagttctttaatcgtcagagccaagaaccatactcataatttgcccggcaac
ataaccgtggttctcggagtcaatggttacatatggttaaggaaaacatctcagatggat
ttagcaagggatacgccgtccgcgaacaacagcgcctcaagtaaatcgcctgggcctact
ggtgcagtatcattgaatccctcaatcacaagactagaagaagaatcttcatggcaaata
tactccgacgaaaacgaccctttgatatcgaacaacatacgacaagcaatttgccgatat
gcgaacgtgataaaagcgttggcgttctgcgaaattggcatcactcaacagcgtatagtg
agcgcttacgaagctagtatggtctactcaaatataggtgaactgattgagaaaaacgta
atggaatccataggcagtgatattctaaccgccgaaaaaatgagaggtaacggcaactaa
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