KEGG   Saccharomyces paradoxus: SPAR_K01910
Entry
SPAR_K01910       CDS       T08193                                 
Name
(RefSeq) Swd2
  KO
K14962  COMPASS component SWD2
Organism
spao  Saccharomyces paradoxus
Pathway
spao03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPAR_K01910
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_K01910
   03036 Chromosome and associated proteins [BR:spao03036]
    SPAR_K01910
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SPAR_K01910
Chromosome and associated proteins [BR:spao03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     SPAR_K01910
    COMPASS/SET1 complex (yeast)
     SPAR_K01910
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_Prp19 WD40 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WDR55 EIF3I Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SPT8 Beta-prop_WDR75_1st eIF2A Beta-prop_EIPR1 Beta-prop_TEP1_C
Other DBs
NCBI-GeneID: 54631959
NCBI-ProteinID: XP_033767606
UniProt: A0A8B8UV65
LinkDB
Position
XI:425827..426816
AA seq 329 aa
MTTVSINKPNLLKFKHVKSFQPQEKDYGPVTSLNFDDNGQFLLTSSSNDTMQLFSATNCK
FLDTIASKKYGCHSAIFTHAQNECIYSSTMKNFDIKYLNLETNQYLRYFSGHGALVNDLK
MNPVNDTFLSSSYDESVRLWDLKISKPQVIIPSLVPNCIAYDPSGLVFALGNPENFEIGL
YNLKKIQEGPFLIIKINDSTFSQWNKLEFSNNGKYLLVGSSIGKHLIFDAFTGQQLFELI
GTRAFPVREFLDSGSACFTPDGEFVLGTDYDGRIAIWNHSDSISNKILRPQGFIPCVSHE
TCPRSIAFNPKYSMFVTADETVDFYVYDE
NT seq 990 nt   +upstreamnt  +downstreamnt
atgactactgtgtccatcaataaacccaacctgctgaaattcaaacatgttaagagcttc
caacctcaagaaaaagactatggacccgtaacctcattgaatttcgacgataatggccag
ttcctactgacctcttcttccaacgatacaatgcaattgttcagcgccacgaattgcaaa
tttctggacacgatagcatctaagaaatacggctgtcattctgctatcttcacgcacgca
caaaacgaatgtatctattcttctacaatgaaaaatttcgacattaaataccttaacctg
gaaacaaatcaatatctaagatacttctccggacatggcgccctagtgaacgacttaaag
atgaacccagtgaacgacacatttctatcgtcatcgtatgatgaatctgtcaggctttgg
gatttgaaaatttctaaaccacaggtaattattccaagcctcgtaccaaattgtatcgca
tatgatccaagtggtcttgtctttgccctggggaacccagaaaattttgaaattgggcta
tataatttgaaaaaaatccaggaaggtcctttcctgataatcaaaatcaatgattccact
ttcagtcaatggaataaactagaattctctaacaacgggaaatatttattagttggctcc
tcgattggcaaacacttaattttcgacgcatttacaggtcaacaattatttgaactaata
ggaacaagggccttcccggtgagagaatttctagattctggatctgcttgtttcacacca
gatggtgaatttgtccttggaacggattatgatggtaggattgctatctggaatcattct
gattcaataagtaacaagatactaaggccgcaaggatttattccctgtgtttctcatgag
acttgtcccaggtcaattgcattcaaccctaaatattcgatgtttgttacagcagacgaa
acagtagatttttacgtatacgatgaatga

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