Saccharomyces paradoxus: SPAR_K01970
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Entry
SPAR_K01970 CDS
T08193
Name
(RefSeq) Prp40
KO
K12821
pre-mRNA-processing factor 40
Organism
spao
Saccharomyces paradoxus
Pathway
spao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAR_K01970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spao03041
]
SPAR_K01970
Spliceosome [BR:
spao03041
]
Complex A
U1 snRNP components
U1 related factors
SPAR_K01970
Complex B
SPAR_K01970
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Glyco_hyd_101C
WW_2
Motif
Other DBs
NCBI-GeneID:
54631965
NCBI-ProteinID:
XP_033767612
UniProt:
A0A8B8UV14
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Position
XI:440018..441769
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AA seq
583 aa
AA seq
DB search
MSVWKEAKDANGRVYYYNTLTKKSTWEKPKELISQEELILRENGWRAAKTAEGKVYYYNP
TTRETSWTLPAFEKKVEPIKEEQNDAIPSAQADGNKIGLTDERKKELSQSIREEGSQYAN
NSKLLNVRRRTKEEAEKEFITMLKDNQVDSTWSFSRIISELGTKDPRYWMVDDDPLWKKE
MFEKYLSNRSADQLLKEHNEISKFKEAFQKMLENNSYIKYYTRWSTAKRLIADEPIYKHS
VVNETTKRQTFQDYIDTLVDAQKESKKKLKTQALKELREYLSGILTTSSPETFITWQQLV
NHYVFDKSKRYMANRHFKVLTHEDVLNEYLKIVNTIENDLENKLNELRLRNYTRDRIARD
NFKSLLKEMPIKIKANTKWSDIYPYIRSDPRFLHMLGRNGSSCLDLFLDFVDEQRMYIFA
QRSIAQQTLIDQKFEWNNADGDEITKKNIEKVLANDQKFDKVDKEDISLITDGLIKQRNE
KIQQKFENERRILEQKKHYFWLLLQRTYTKAGKPRPSTWDLASKELGESLEYKALGDDDN
TRRQIFEDFKPESPAPTAESTTASLTLTASKKRHLSPAVELDY
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtttggaaggaggctaaagatgcaaatggaagggtatattattacaacactttg
acgaagaaatccacatgggagaagccaaaggaacttatatctcaggaagaactgattctt
cgagaaaacggttggagggcggccaagacggcagaaggcaaagtatactattataatccc
accacaagagaaactagctggactctcccggccttcgagaagaaagtagaacccatcaaa
gaagaacaaaatgatgcaataccatctgcacaagctgatggtaataaaataggacttaca
gatgagagaaaaaaagagctaagccaaagtattagagaagagggaagccaatatgccaat
aactctaaactgctcaatgtcaggagaaggactaaagaagaggcagaaaaggaatttatc
acgatgctgaaggacaaccaagtagactctacttggtcattcagtagaattatttcagaa
ctaggaaccaaagatccgaggtattggatggtcgacgatgatcccttatggaaaaaagaa
atgtttgaaaaatatctttccaatagatcggctgatcaacttctaaaagaacataatgaa
ataagtaaattcaaagaggcttttcaaaaaatgctagaaaacaattcttatataaaatat
tacacccgttggtctaccgcgaagagactaattgctgatgaaccaatatacaaacactct
gtggtcaatgaaacaacaaagaggcagaccttccaagattatatagacactctcgtcgat
gcccagaaagagtccaaaaaaaaattgaagacgcaggccctaaaagaattaagagaatat
ttaagcggtattctaacaacttcatctcccgaaactttcataacatggcagcagcttgtc
aatcactatgtttttgataagagtaagagatatatggcgaatcggcatttcaaagtttta
acccacgaagatgttttgaacgagtacctgaagatagtaaatacaattgaaaatgatctt
gaaaacaaactaaatgagcttcggctgcgcaattatacaagagaccgtattgctagagat
aatttcaagagcttattaaaagaaatgccaattaaaatcaaagcaaatactaaatggtcc
gacatttatccttacatcaggtcagatccgcgctttttgcatatgcttggaaggaacggt
tcgtcctgtcttgatttatttttagattttgttgatgaacaaaggatgtacatctttgcg
cagagatcaatagcccaacagacattgatagatcaaaaatttgaatggaataatgctgat
ggcgacgaaatcaccaagaaaaacatagaaaaagttctggcaaatgaccaaaagttcgac
aaggtggataaagaagacatcagtttgattactgatggtttaataaagcaaagaaacgaa
aaaatacagcagaaattcgaaaatgagcgcagaatattggagcaaaagaaacattatttt
tggttacttttgcaaaggacatatacaaaagctggtaagcccaggcccagtacgtgggat
ttggcttccaaagaactaggtgaatcccttgagtacaaggcactaggcgatgacgataat
acaagaaggcaaattttcgaggatttcaagcccgaaagccctgcaccgactgcagaaagc
accaccgcaagcctaacattaaccgcgtcaaaaaagagacatttaagcccggctgtcgaa
ttagactattga
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