Saccharomyces paradoxus: SPAR_K02890
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Entry
SPAR_K02890 CDS
T08193
Name
(RefSeq) Prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
spao
Saccharomyces paradoxus
Pathway
spao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAR_K02890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spao03041
]
SPAR_K02890
Enzymes [BR:
spao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPAR_K02890
Spliceosome [BR:
spao03041
]
Complex C
Other components
Step II factors
SPAR_K02890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_30
ResIII
PhoH
ATPase
SLFN-g3_helicase
ABC_tran
Herpes_ori_bp
SRP54
T2SSE
Helicase_RecD
AAA_24
AAA_7
Sigma54_activat
AAA_16
Motif
Other DBs
NCBI-GeneID:
54632057
NCBI-ProteinID:
XP_033767704
UniProt:
A0A8B8UVA7
LinkDB
All DBs
Position
XI:621072..624290
Genome browser
AA seq
1072 aa
AA seq
DB search
MGNLGCEERVKDIFSELTSKELTPGLLLTLQRLARKPNTNLKQFIAGCKALTKLRSNNTI
TFNELRELLKNSPEEDSTGPKKIAPSINKRKKFKIQLDLDDNEDELDSPIQKKPAPTKTL
FKRIDKLKAKQLRQYSPIIKDPSPNNEQQRTENGHKEAREQEPSRNELVEEDREWYDNDD
DYGNHVPESLSEIPEDVKTPPVIKNIDNDDALRNTVQLYPIPLKQRMEWIPPFLSKFALE
NKVPTSIIIGSISETSSQTAALAMVNPFRNPDSEFSVNAKRGSKLVALRRINMEHIQQSR
DNTTVLNTAMGEVLGLENNNNAKGESSRKISDDEAVHTPSKNEIKRTKEQLPVFRCRSQL
LSLIRENQVVVIIGETGSGKTTQLAQYLYEEGYANSKGKSIVVTQPRRVAAMSVAKRVAM
EMQVPLGKEVGYSIRFEDVTDSEYTKLKFVTDGILLRETLLDDTLDKYSCVIIDEAHERS
LNTDILLGFFKILLARRRDLKLIITSATMNAKKFSTFFGNAPQFTIPGRTFPVQTIYTSN
PVQDYVEAAVSQAVKIHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQVYSKKYGTSN
LEEIKDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDCGYS
KLKVYNPKIGLDSLIITPISKANADQRSGRAGRTGPGTAYRLYTEDTFKEDMYLQTIPEI
QRTNLSNTLLLLKSLDVTDELSRFPFIDKPPLQTFLSSLYELWFIGAIDTKGQLTPLGLQ
MAKFPLQPSLSKILLIAVQNGCSDEMLTIVSMLSVPQVFYRPKERQREADIARNKFFIAK
SDHLTLLNVFVQWRANNFSSHWCNKHFVQYKSLVRAKDIRDQLLTILKSQKIPVISSGKD
WDIIKKCICSGFAHQAAKIKGLRNYVHLKTGVSVQLHPTSALHGLGDLPPYVVYHELLMT
SKEYICCVTSVDPFWLMEYGGLLYEIKRVKNDEESGTTGLFGEHYEHAVDKVEDEIDINI
KRYKNMRDNVVQKLKMADDSNKGENEQRFQKQNTLNSKENLIKPFKRRKPFF
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatctagggtgtgaggaaagggtaaaagatatatttagtgagcttacatcaaaa
gaactaacacctgggttgcttttgacactgcagagactggcgcgaaagccgaacactaac
ctaaaacaatttattgccgggtgtaaagctttgacgaaactccgcagcaacaatacaatt
accttcaatgaacttcgagagcttctcaaaaatagtcccgaagaggactcgacaggccca
aagaaaattgcaccttccataaataagagaaagaaatttaagatccagttggaccttgat
gacaatgaagatgagctggattctcccattcaaaagaaaccagcgcctacaaagacgttg
ttcaagaggatagataaattaaaagccaaacagttgaggcaatattctcctatcataaag
gatccttccccaaataatgaacagcagcggacagaaaatggtcataaagaagcaagggaa
caggaaccgtctcgaaatgaactagtagaagaggatagggaatggtacgataatgatgat
gactacgggaatcatgttcctgagtctctgtctgaaataccggaggatgtgaaaacacca
cctgtgattaaaaatattgataatgatgatgctttacgaaatacagttcaattgtacccc
atcccgctgaagcagagaatggaatggatccctccctttttgtcaaagtttgcccttgaa
aacaaagtacccacttccataatcattggatccatctccgagacgtccagccaaacagcc
gctttagccatggtaaacccattcagaaatcctgacagtgaattttctgtgaacgctaaa
cgaggtagtaagctagttgctttgagaaggataaacatggagcacatccagcaatctcga
gataacactactgttttgaatactgccatgggagaggtgctaggcttggaaaataacaat
aatgcaaaaggtgagagcagccgaaagatcagcgatgatgaagctgtgcacacaccgtcg
aaaaatgagattaagcgtactaaagagcaattgcctgttttccgctgcagatctcagtta
ttatcattgataagagaaaaccaagtagtggtgataattggtgaaacgggctcaggtaaa
actactcaacttgcacagtatttgtatgaagaaggatatgccaatagcaaggggaaatct
attgttgttacgcagccgagaagagtagcagccatgtccgtcgctaaaagagttgcaatg
gaaatgcaagttccactgggtaaagaagtgggctattctatcagattcgaagatgtgacg
gattccgaatatacaaaacttaagtttgtgacggatggtattctactcagagagacttta
ttagatgatacacttgacaagtatagttgtgtcattattgatgaagcccatgaaaggtca
ttgaacacagacatcttactaggttttttcaaaattttactggcacgaagaagagatcta
aaactcattatcacttctgcgacaatgaatgccaaaaaattctctactttttttggcaat
gctccgcaattcacgattcctggaagaactttccccgtgcagaccatatatacttccaac
cctgtgcaagactacgtagaagctgctgtttctcaggctgtgaaaattcatttagcaaat
gattgttcgagcggtgatattcttatcttcatgacaggtcaagaagatattgaaacgacg
tttgacactttgcaagaaaagtttttgcaagtatattcaaaaaagtacggtacatcaaac
cttgaggagattaaagatattgaaattttgccaatttactcagcattacctgcagattta
caattcaaaatttttcaggacctgcatggcactaaacggaaaattataattgcgacaaat
attgctgagacctcattgaccatcaaagggatcaggtatgttattgattgtgggtattct
aaattaaaagtttacaatccaaagattggtctagacagtttgataataacacccatatca
aaagccaacgctgaccaaagatccggaagggcgggtaggactggaccgggcactgcatat
cgattatacacagaagatacttttaaagaggatatgtacttgcaaacaatacctgagatc
caaaggacaaatttgtcaaacactcttctactactaaaatctctggatgttactgatgaa
ttgagtaggttcccattcattgacaaaccacccttacaaacattcctatcttcattgtat
gagttatggttcataggagctatagacaccaagggacaattgactccattgggattacag
atggcaaaatttcccttacagccttctctttccaaaattttattaattgctgtacaaaac
ggctgcagtgatgaaatgttaacaattgtgtccatgctttctgttccacaagtcttttat
agacccaaagaaagacaaagagaggcagatattgcaagaaataagtttttcattgcaaaa
tcagatcacttaacgttactaaatgtttttgtacagtggagggcaaacaacttcagttcg
cattggtgtaacaaacatttcgtccaatacaaatcacttgttagggcgaaagacattcga
gatcagctgttaacgatacttaaatctcaaaaaattcctgtcatttcttctggtaaggat
tgggatatcattaaaaaatgtatttgttcgggctttgctcatcaagcagctaaaataaaa
gggctacggaattatgttcacttgaaaactggtgtaagtgttcaattgcaccctacgagt
gcattacatgggttgggtgatttgcccccttacgtcgtatatcatgaattattaatgact
agcaaagaatacatttgttgtgttacttccgtagatccattctggttaatggaatatggt
gggttactctacgaaatcaagcgtgttaagaatgatgaggaatctggaaccacaggtctc
tttggtgaacactatgaacatgctgttgacaaggttgaagatgaaatagacatcaatatt
aaaagatacaagaatatgagagataacgttgtacagaagcttaaaatggcggacgattca
aacaaaggtgaaaatgagcagagatttcaaaagcaaaatactttaaacagcaaagaaaat
ttaattaaacctttcaaaagaaggaagccttttttttag
DBGET
integrated database retrieval system
