KEGG   Saccharomyces paradoxus: SPAR_N00950
Entry
SPAR_N00950       CDS       T08193                                 
Name
(RefSeq) Csl4
  KO
K07573  exosome complex component CSL4
Organism
spao  Saccharomyces paradoxus
Pathway
spao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAR_N00950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_N00950
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SPAR_N00950
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SPAR_N00950
SSDB
Motif
Pfam: EXOSC1 CSL4_N FSAP_sig_propep
Other DBs
NCBI-GeneID: 54633137
NCBI-ProteinID: XP_033768726
UniProt: A0A8B8UYD7
LinkDB
Position
XIV:212312..213190
AA seq 292 aa
MAYNFQFPEIAYPGKLICPQYSTENKDGEDIIFNYVSGPGTKLLQYEHNGSTLEAITATL
VGTVRCEEERNTDEEEEREATDQSTEEEKSVDASPSDVTRRIVKYIRVSVVPGTGNDCKA
GKYANNDFANNLPKEGDIVLTRVTRLSLQRANVEILAVEDKPSPIDSGVGSNGTGIVAAG
GGSGAATFSVSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDG
TNYYLTTARNDLGVVFARAANGAGGLMYATDWQMMTSPATGTTEKRKCAKPF
NT seq 879 nt   +upstreamnt  +downstreamnt
atggcatacaattttcaatttccagaaatagcttatccaggcaaactaatatgcccacaa
tacagtacagaaaataaagatggcgaagatataattttcaattatgtgtccggtccgggg
actaaactactacaatacgagcacaatggaagtactctagaagctataactgctacatta
gttgggacagtgaggtgcgaagaagagagaaacactgatgaggaagaagaacgtgaagcc
actgatcaatctacagaagaagaaaaatcagtagatgcatcacctagtgatgtgacaaga
agaattgtaaaatatatccgggtttccgtggttcccgggacaggaaatgattgtaaagcc
ggtaaatatgccaataatgactttgccaataacctaccgaaagaaggtgacattgtattg
accagagtgacaagactttcgttacagcgagccaatgtcgagattttagctgtagaagac
aaaccatctccaattgatagtggtgttggtagtaatgggacggggatagttgccgctggt
ggcggttctggagcagctacattctctgtctctcaagcatcatcagatttaggtgagaca
tttagaggtataatcaggtctcaggatgtgcggtccactgacagagatcgtgtgaaggtg
atagaatgtttcaagccgggagatattgttagggcgcaagttttatcattaggtgatggt
accaactattatttgaccactgcaagaaatgaccttggagtagtgtttgccagagcggct
aacggtgctggtggattgatgtatgctacagactggcaaatgatgacttcaccagctaca
ggcacaacagagaaacgcaaatgtgcaaaacctttttaa

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