Saccharomyces paradoxus: SPAR_O01900
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Entry
SPAR_O01900 CDS
T08193
Name
(RefSeq) Rat1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
spao
Saccharomyces paradoxus
Pathway
spao03008
Ribosome biogenesis in eukaryotes
spao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SPAR_O01900
09123 Folding, sorting and degradation
03018 RNA degradation
SPAR_O01900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spao03021
]
SPAR_O01900
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_O01900
03009 Ribosome biogenesis [BR:
spao03009
]
SPAR_O01900
03016 Transfer RNA biogenesis [BR:
spao03016
]
SPAR_O01900
Transcription machinery [BR:
spao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SPAR_O01900
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
SPAR_O01900
Ribosome biogenesis [BR:
spao03009
]
Eukaryotic type
Pre-60S particles
RNases
SPAR_O01900
Transfer RNA biogenesis [BR:
spao03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
SPAR_O01900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
54633619
NCBI-ProteinID:
XP_033769194
UniProt:
A0A8B8UZJ9
LinkDB
All DBs
Position
XV:complement(409051..412074)
Genome browser
AA seq
1007 aa
AA seq
DB search
MGVPSFFRWLSRKYPKIISPVLEEQPQVVDGVILPLDYSAPNPNGELDNLYLDMNGIVHP
CSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRFRS
ARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYWTAF
KLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIFLG
LATHEPHFKILREDVFAQDNRKRNNLKDTINMTEEEKQFLQKQNSEQPFLWLHINVLREY
LSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLP
KLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRHIQEARKKEAFERRKAQKNMSKGQD
RHPIVATEQLQMYDTRGNLAKGSWNLTTSDMVRLKKELMLANEGNEEAIAKVKEQSDKNN
ELMKDVSKEEIDDAVSKANKTNFNLAEVMKQKLINKKHRLEKDNEEEEEIAKDNKKIKTE
KAESECDLDTEIKDEILADVNDRENSETTEISRDSSIRSTTIVSEGPKNGVFDTDEFVKL
FEPGYHERYYTAKFHVTPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPYHYAP
LATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHTLPKIFRSLMSEPDSEIIDFYPE
EFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRGEPVLLISNKNA
NYERFSKKLYSKDNNNNHVIVKFQHFKSGLSGIVSKDVEGFELNGKMVCPIQGGSLPDLS
TSLILKMSYRLIPLPSRNKSIILNGFIPSESVLTAYDLDSIMYKYNNQNYSRRWNFGNDL
KQNIVPVGPKGITQYKPRTGGYRAFFYFAELSRNNTQPAYNYGRNSYNTQSGFNNSRYDG
GNNNYRQNSNYRINNYSGNRNGGQYGGNSYSRNNKQSRYDNSRTNKR
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccgtcatttttcagatggttatctcgaaaatatcccaagatcatatccccc
gtattggaagaacaacctcaggtggtcgacggtgtcatattgccgttggattattctgcc
ccaaatccaaacggtgagttagacaatctatatttggatatgaatggtatcgtccatcca
tgttcgcatccagaaaacaaaccgcctccagagactgaagatgaaatgcttttggcagtt
tttgaatacaccaaccgtgtgttaaatatggctagaccacgcaaggttcttgttatggct
gttgatggtgttgctcctcgtgccaaaatgaatcagcagagagcacgtagattcaggagt
gctagggatgctcaaattgaaaatgaagctagggaagaaattatgagacaacgagaggaa
gttggtgaaataatcgatgatgccgtcaggaacaagaaaacttgggattcaaatgcaatt
actccgggcaccccgtttatggataagcttgcagcggctctacgttattggacagcattt
aaactggccactgatccaggttggaaaaacctgcaggttattattagtgatgctaccgtc
ccaggtgagggtgagcataaaatcatgaattttattaggtctcaaagagctgatcctgaa
tataatcccaatacaacgcattgtatatacggtttggatgctgatttaatttttttgggc
ctcgccactcatgagccacattttaagattttaagagaagatgtttttgctcaagataat
cggaaaagaaataacttgaaagataccataaatatgactgaagaagaaaaacagtttctt
caaaagcaaaattctgaacagcctttcttgtggttgcacataaatgttttgagggaatac
ttgtccgctgaattatgggtcccaggtcttcctttcacatttgatttagaaagggctatt
gacgattgggttttcatgtgttttttctgtggtaatgactttttgccacatttaccatgt
ttggatgtcagggaaaatagtatcgatattctcttggatatttggaaggtggtactaccg
aaattgaaaacatatatgacctgtgacggtgtcttaaatcttccttctgttgaaacatta
ttacaacaccttggctctcgcgagggggacatcttcaaaactagacatattcaagaagcc
agaaagaaagaagcatttgaaagaaggaaagcgcagaagaatatgtcaaaaggccaagat
aggcatcctatagtagctactgaacaactgcaaatgtatgatacgcgaggaaatttagca
aaaggttcgtggaacttgactaccagtgatatggtgagattgaaaaaggaactaatgctt
gcaaatgaagggaacgaagaagcaattgctaaagttaaggaacagagtgataagaacaat
gaactgatgaaagatgttagcaaggaggaaattgatgatgccgttagcaaggctaacaaa
actaacttcaaccttgcagaagtaatgaaacaaaaactaataaataagaaacatcgcctt
gaaaaggataatgaagaggaagaagaaattgctaaggataacaaaaaaattaagacagag
aaggcggaatcggagtgcgatcttgatacagagattaaggatgagattctagcagatgta
aatgatagggaaaattctgagactacggaaatatcaagagattcctccattcgcagtact
acgatcgtcagcgaaggtcccaaaaatggggtctttgacacagacgaatttgtcaagcta
ttcgaacctggctaccacgaaaggtattacacagcaaaatttcacgttactcctcaagat
attgaacagttaagaaaagatatggtaaaatgctatattgaaggcgttgcttgggtatta
atgtattactatcaaggctgtgcttcttggaattggttctatccgtaccattatgcccca
ctggcaacagatttccatgggttttctcatttggagataaagttcgaagaaggtactcca
tttttaccttacgaacaattgatgagtgttttgccagctgcatctggccacactttgcca
aaaattttccgatccttaatgtctgagcctgattctgagattattgatttttatcctgaa
gagtttcccatagatatgaatggcaagaagatgtcctggcaaggcatagcgttgctccca
ttcatcgatcaagacagactattgacagcagttcgtgcacaatatcctttactttctgat
gctgagagggcaagaaatattcgtggagaacctgttttattaataagtaacaaaaatgct
aattatgagagattttcgaagaaattgtactcgaaggacaacaacaacaatcatgtgata
gtgaagtttcaacatttcaagagtgggctaagtggtatcgtatcaaaggacgtcgaaggt
tttgaattaaatgggaaaatggtgtgtccaattcaaggtgggtcactaccagatttatct
actagtttgattctaaagatgtcatacagattaatcccattaccatcaagaaataagtcc
attatactaaacgggttcattccgtcagaatcggtcctaacagcatatgaccttgattcc
ataatgtacaagtacaataaccaaaattactcccgtcgttggaacttcgggaatgatctg
aagcaaaatattgttccagtaggaccgaaaggtattactcaatacaaaccaagaactggt
ggttatcgtgcattcttttacttcgctgagctcagtagaaacaatacacaacccgcctac
aactatggtaggaacagctacaacactcaatctggcttcaataatagtagatatgatggt
ggaaacaataattacagacagaattcaaactataggatcaataactattccggaaataga
aacggtggacagtacggcggcaacagctactctcggaataacaagcaaagtcggtatgac
aattcaagaacaaataagcgttaa
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