Saccharomyces paradoxus: SPAR_P04310
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Entry
SPAR_P04310 CDS
T08193
Name
(RefSeq) Ski3
KO
K12600
superkiller protein 3
Organism
spao
Saccharomyces paradoxus
Pathway
spao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAR_P04310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_P04310
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
SPAR_P04310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_22
TPR_19
TPR_2
TPR_14
TPR_8
TPR_1
TPR_CcmH_CycH
TPR_11
TPR_16
TPR_17
TPR_12
TPR_9
ANAPC3
HrpB1_HrpK
ARM_TT21_N
Motif
Other DBs
NCBI-GeneID:
54634373
NCBI-ProteinID:
XP_033769928
UniProt:
A0A8B8V1U6
LinkDB
All DBs
Position
XVI:873038..877321
Genome browser
AA seq
1427 aa
AA seq
DB search
MLDIKQLLKEAKRELTNRDYEETIEISEKVLKLDPDNYFAHIFLGKAFSSLPASNDVSSN
LNLQRATTHYISATRSVPNNLLAWKGLFLLFKTTEVVPDTLSYDEYFDLCGQYADALLKQ
EQSQVELINDIKLLKKTHPDCQRAFYQHLKPGSLMAETIGRHLSTPQDALLNLIKILASI
ETTEIGKTLSQNRLKLKASDPDYQIKLNSFSWEIIKNSEIDQLYNQLVNILADDQLRSEI
ENQWLEYRIKVLKSMPLDVKKDFFTKVKEMVEDMVLVNHQSLLAWQKFFEWTDYEDLDNM
DAALILKYFKKFPKDPLAMILYSWLSSKLSKYDIKSLESANQSPESQNKGTKETDIKDID
EGNEDKVKDHGEDESKNQNENENDAKEDEEEDLDDIEIGLLEEEVVTVLTENIVKCKNNI
LAHRILCQYYLLTKEYEAALPYIKNGISLIAYNIKDLGVYLPLTKREFSLDLATVYTYVD
APKDHNAALRLYDNILSGDSDNIQAKMGKGIIFIERKNWKDAMTLLTQVHEQSPDNLEVL
SELSWSKAHMDYTDDALAGLDTVVKGIKGMDLRSIDFRALNLWRQAKVYIMKHASIKDTK
QENIKCAFKLLIQSIKILDTFAPGFSTLGDIYCHYYKDHLRAFKCYFKAFDLDAGDYTAA
KYITETYASKPNWQAASSIASRLIKSEKAKAQLRSNNWPFRAVGIAHLEKQEESDSIEWF
QSALRVDPNDVESWVGLGQAYHACGRIEASIKVFDKAIQLRPSHTYAQYFKAISLCDVGE
YLESLEILEKVCQETATEESFQIGLVEVLMRYSLDLYSQGFLLKSVAIANDTIERIKIII
TELKCVNQQVWICLSQVLRLFIWIESKVDTLPVESLVSIFESSELTGSEEIDSIDNIKID
TLLDSTTDDNVSIACKFLILASKYSVSNQNFSDIAGTVRASYWYNIGISELTAFITLKEP
QYRDAAIFAFKKSIQLQSNTSETWIGLGIATMDINFRVSQHCFIKATALEPKAADVWFNL
AMLGLKKNDTEFAQQVLNKLQSLAPQDSSPWLGMALIFEEQGDVIESSKLFAHSFILSNG
RSKAAQFLYAKNVLENHINNGDDERDIETVERLTAASIALEQFFKKSPDNSFALQCALLT
LERLHHYENASELANRLIGILEKRFEKTQDEKELFTFAIIKGQFARIHLGLGNFELSIEN
ADLSQGIISESRDEKSMKTKISNHICLGLSYFFLNDFDQTLNQFQELLSVSKDSKHLVIL
IAKVLYDVGESDTKEIALQELTEYITIKGADLLITLTIAAMSILEDKHEDLNIILDELKA
LPLSKQIMDRHKDAPYLIEEITKRLYHNDSGKQVWQRSAYFFPNNLKVWERLNKNIQRKI
ASDGQNKVTAEEMSKLYCESKNLRSIQRGVFLCPWNVTALKALNECF
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgttggatattaagcagttactgaaggaagctaaacgggaattgaccaatcgtgactat
gaagagaccatcgaaatatcagaaaaggtccttaaattagaccctgataattacttcgca
catatctttctagggaaggcattttcgagtcttccagctagcaatgacgttagttcaaat
cttaatctgcaaagagctactacccattacatatctgctacgaggtcagttcctaataac
cttttagcgtggaagggactttttctgttatttaagaccactgaagttgtccctgataca
ctttcgtacgatgaatattttgatttgtgtggccaatatgcagatgcacttttaaagcag
gaacaatctcaagtagaactaataaatgacataaaactgttaaaaaaaacacatccagat
tgccaaagggccttttatcagcatttgaaacctgggtcgctaatggcagaaaccattggt
cgtcatctatctacaccccaggacgctttattaaaccttataaaaatattggcaagtatt
gaaaccacggaaattggaaagacccttagtcagaacaggttaaaactaaaagctagtgat
ccagattatcaaatcaaactaaactcattctcgtgggaaataattaaaaattcagaaatt
gatcagctatacaatcagttggtaaacatcctcgccgatgatcagttgagaagtgaaatt
gagaaccagtggttagaatatagaatcaaagtgttaaaatcaatgccgctcgatgtaaaa
aaggattttttcacaaaagtgaaggaaatggtcgaagatatggttcttgtgaatcatcaa
tctctacttgcgtggcaaaagttttttgaatggacggattacgaagatttggacaacatg
gatgctgcattgatactaaagtactttaagaaatttcctaaagatccattggccatgatc
ctttattcttggctttcttcaaaattatccaaatatgatatcaaaagtttggaatccgct
aaccaatcacctgaaagtcaaaataaggggacgaaggaaacagatatcaaggacatagat
gagggaaatgaagataaagttaaagatcatggtgaagatgaaagcaaaaaccaaaatgag
aatgagaatgacgcaaaagaagatgaagaggaggaccttgacgacatagaaattggttta
ttagaagaagaagttgttactgtattgacggagaatattgtcaagtgtaaaaataatatt
ttggcgcatcggattctctgtcaatattacttactgaccaaggagtacgaggcagcttta
ccgtacattaaaaacggtatttctttgattgcctataatataaaggatctgggggtttat
ttaccattaaccaaaagagaattctctctggatttggccactgtttatacatatgtggat
gctccaaaggaccacaatgctgcgctaagattatatgataatattttatccggtgattct
gacaatatacaggcaaaaatgggtaagggcataatttttattgaaaggaaaaattggaaa
gatgctatgacattactaactcaggtgcatgaacaatcacctgataacctagaagtttta
tccgaactgtcatggagtaaggcccatatggattatacggacgatgcattagccggctta
gataccgtcgtcaagggtatcaaaggcatggatttacgttcaatagatttcagagcatta
aacttatggaggcaagccaaagtttacattatgaaacatgcttccatcaaagataccaaa
caggaaaatatcaagtgcgcattcaaactactcattcagagtattaaaatattggacact
tttgcccccggattttcaacactgggagacatctattgccactactataaagaccattta
agagccttcaaatgttacttcaaagccttcgacctggacgcgggagattatacagccgca
aagtatattaccgaaacgtatgcaagcaagcccaattggcaagcagcctcttccatcgct
tcaagattgatcaaaagtgaaaaggcaaaggcacaactacgttcgaataattggccattt
agggctgtggggattgctcatttggaaaagcaagaagaaagtgattcaattgagtggttc
caatctgctttacgtgtcgacccgaatgatgtggagtcatgggtcggcctgggacaagca
taccacgcgtgtggtcgtatagaagcatcaatcaaagttttcgataaggcaattcaatta
agaccctctcatacttatgcccaatactttaaagctatttctctatgtgacgtaggtgaa
taccttgaaagtttagagatactggaaaaggtatgtcaagaaaccgctacagaagaatca
ttccaaattggtttagtggaagtgcttatgaggtactctttggatttatattcacaggga
ttcttgctcaaatcagttgcaattgcaaatgatactatcgaaagaatcaagataatcatc
actgaattgaaatgcgttaaccaacaggtttggatttgcctttcacaagttctgagatta
tttatttggatagagtcaaaggtagatactttacccgttgaatcgctagtatcaattttt
gaaagttctgaacttactggaagtgaggaaattgattccattgacaacatcaaaatcgac
acactacttgatagtaccaccgatgataacgtgtccattgcgtgtaagtttttgatccta
gcttcaaaatatagcgtttcgaatcaaaacttttctgatatagcaggaacggttagagct
tcatactggtataatatcggtatctcagagctcacggcattcataacattgaaggagcca
cagtatagagatgctgccatttttgcttttaagaaatctattcagttacaatctaataca
agtgaaacttggattgggctaggaatagctactatggacattaactttcgcgtatctcaa
cattgcttcatcaaagcaactgctttggaacctaaagccgcagatgtttggttcaactta
gctatgttgggtttaaagaaaaacgatactgagtttgctcaacaggttctcaataaatta
cagagccttgcaccacaagattcatcaccttggctaggtatggccttgatcttcgaggaa
caaggagacgttatcgaaagttctaaactgtttgcgcactccttcatattatctaatgga
agatcaaaggctgcgcaatttctatatgccaaaaatgttcttgaaaaccacattaataat
ggcgatgatgaaagagatattgaaacggtggaaaggctaaccgctgcttcaatagcttta
gagcagttcttcaagaaaagtcctgataattcatttgctcttcaatgtgctctgttaact
ctggaaaggttacatcactatgaaaatgcaagcgaactggctaatcggttgataggaatt
ttggagaaaaggtttgagaaaactcaagatgaaaaagaactgtttacctttgctataatt
aagggacaatttgcccgtatccatctaggtttagggaactttgaactctctattgaaaac
gcagatctttctcaaggtatcatatctgaatctagggacgaaaaatcaatgaaaactaaa
atatctaatcacatttgtttaggactaagttatttctttttaaatgacttcgatcaaact
ttgaaccaattccaagagctattaagtgtttcaaaggattctaagcatttggtgatttta
atcgcaaaggtgctttatgatgtaggtgaatctgacacaaaggaaattgccttacaggaa
ctaacagaatatataaccattaagggagcggacttgttaataacactaacgattgcggcc
atgtcaattctggaagacaagcatgaagatttgaatattattttagatgaattgaaagcc
ttgccattatccaaacaaataatggataggcacaaagacgcgccatatctgatagaagaa
attactaaaagactttatcataatgattccggcaaacaagtatggcaaaggagtgcatac
tttttccctaataatctcaaggtttgggagagattaaacaagaacattcaacgtaaaata
gcttctgatggccaaaataaagttactgcggaggagatgagtaaattatactgtgagagt
aaaaatttgagaagcattcaaaggggcgtgtttctatgcccttggaatgttactgcattg
aaggcgctaaacgaatgtttttag
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