Sphingomonas alpina: H3Z74_04480
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Entry
H3Z74_04480 CDS
T07078
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spap
Sphingomonas alpina
Pathway
spap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3Z74_04480 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spap03021
]
H3Z74_04480 (rpoC)
03400 DNA repair and recombination proteins [BR:
spap03400
]
H3Z74_04480 (rpoC)
Enzymes [BR:
spap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3Z74_04480 (rpoC)
Transcription machinery [BR:
spap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3Z74_04480 (rpoC)
DNA repair and recombination proteins [BR:
spap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3Z74_04480 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QNQ10482
UniProt:
A0A7H0LLC9
LinkDB
All DBs
Position
complement(967116..971387)
Genome browser
AA seq
1423 aa
AA seq
DB search
MNELTNFANPVAKTETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVIEPGITPLEKYQLMTEDELLDAQDEYGEDAFSAG
IGAEAVRIMLQDLDLEGERKELLEELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMLKEGEPGEGMLISDMAEVHQAIEA
GAVTLHTKITTRVPQTDAEGKTYLKRYETTPGRMLLGECLPKSSKVPFDTVNRLLTKKDV
GDVIDEVYRHTGQKETVLFADAIMALGFKHAFKAGISFGKDDMIIPDAKVGLVDETRALV
KDFEQQYQDGLITHQEKYNKVIDAWSGCGDRVATAMMDEIKAVKKLPNGREAPINSIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIIENDCGTERALEMRAIVQGGSTIASLGERILGRTTA
EDIVDTKTGEIVIPSGTLLDEPMITKIEAIGTQAVKIRSPLVCETKIGVCGKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAVADGTMEYRDLRII
MDQRGRRVVLSRSGEIAIVDMDGRERAVHRIPYGAYVMYDDGHIVSKGDRLAEWDPFTMP
VITENPGVVKYVDLIEGKTLVEQADEATGISQRVIIEYRAATKSKEDLRPRLTLLDSDSG
EAGRYMLAPGATLSVEDGAQVSGGDVLARVSREAAKTRDITGGLPRVAELFEARKPKENA
IIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNLIGGS
PDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTL
LAGEQVDRDEMDAINDKLDKKERRAQGKPVLLGITKASLQTRSFISAASFQETTRVLTEA
AVQGKQDTLIGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRVQQRRLQEVLIAPNS
AAEERAAEKLRDVADDTGSDALASVVTSGTGTDADAGEYLIKE
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgccaatccggtcgccaagaccgaaacctttgaccagatc
cagatcggcatcgcgtccccggaccgtatccgctcatggagcttcggcgagatcaagaag
ccggaaaccatcaactatcgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgagaagtgcggcgtcgaggtgaccgtttcgaaggtccgccgcgag
cgcatgggccatatcgaactggcagcaccagttgcgcatatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctgtac
ttcgaagcctatatcgtgatcgagccgggcatcacgccgctggaaaaataccagctgatg
accgaggatgagctgctcgacgcgcaggatgaatatggcgaggacgcgttctcggctggc
atcggcgccgaagcggtccgcatcatgcttcaggacctcgatctcgagggcgagcgcaag
gagctgctcgaagagctggcggtcaccaagtcggaactgaagccgaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcatcgattcgggtaaccgcccggaatggatgatcctc
gaggtcgttccggtcatcccgcccgagctgcgcccgctggtgccgctggatggcggccgc
ttcgcgacctcggatctgaacgatctgtatcgccgcgtgatcaaccgcaacaaccgcctc
aagcgcctgatggaactgcgtgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgacgcactgttcgataacggccgtcgcggccgcaccatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggtcgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggtcgttcggtcatcgtgaccggtccg
gaactgaagctgcatcagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatctatgcgcgcctcgacgccaagggcctcagcatgacgctgaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaagtcattcgcgagcat
ccggtcatgctcaaccgcgcgccgacgcttcaccgtctcggcatccaggcgttcgagccc
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgttcggccttcaacgcc
gatttcgatggcgatcagatggccgtccacgttcccctctcgctggaagcccagctcgag
gcacgcgtgctgatgatgtcgaccaacaacatcctgagcccagcgaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggtctctattatctgtcgatgctgaaggaaggc
gagcccggcgaaggcatgctgatctccgacatggcggaagtgcatcaggcgatcgaggcc
ggcgcggtgacgctccacaccaagatcaccacgcgcgtcccgcagaccgatgccgagggc
aagacctacctcaagcgctatgagaccaccccgggccgcatgctgctcggcgagtgcctg
ccgaagagctccaaggtgccgttcgacaccgtcaaccgcctcctcaccaagaaggatgtg
ggtgacgtgatcgacgaggtctatcgtcacaccggccagaaggagaccgtgctgttcgcc
gatgcgatcatggcattgggcttcaagcacgcgttcaaggcgggcatttcgttcggcaag
gacgacatgatcattccggacgccaaggtcggcctggtcgatgagacgcgtgcgctcgtg
aaggatttcgagcagcagtatcaggacggtctgatcacgcatcaggagaagtacaacaag
gtgatcgacgcctggtcgggctgcggtgatcgtgttgcgacggccatgatggacgagatc
aaggccgtgaagaagctgccgaacggtcgcgaagcgccgatcaactcgatctacatgatg
gcgcactccggtgctcgtggttcgcaggcgcagatcaagcagctggcgggtatgcgcggg
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtcctcgaatatttcaactccacccacggcgcccgcaagggtctcgcggat
acggcgttgaagaccgccaactcgggctacctgacccgccgtctggtcgatgtgtcgcag
gattgcgtgatcatcgagaatgattgcggcaccgaacgcgcgctggaaatgcgcgcgatc
gtccagggcggctcgaccatcgcgtcgctcggcgagcgcatcctcggtcgcacgaccgcg
gaggacattgtcgacaccaagaccggcgagatcgtcatcccctcgggcacgctgctcgac
gagccgatgatcacgaagatcgaggcgatcggcacccaggccgtgaagatccgcagcccg
ctggtctgcgagaccaagatcggcgtgtgcggcaagtgctacgggcgcgatctcgcccgc
ggtacgccggtcaacatcggtgaagcggtcggcgtcatcgccgcccagtcgatcggtgag
ccgggcacccagctgacgatgcggaccttccacatcggcggcgcggcgcagctcaacgag
cagtcgaacctcgaggcggttgccgacgggacgatggagtatcgcgaccttcgcatcatc
atggatcagcgcggccgccgcgtcgtgctgagccgttcgggcgaaatcgcgatcgtcgac
atggacggccgcgagcgtgcggtgcaccgcatcccgtacggcgcgtacgtgatgtacgat
gacggccatatcgtctcgaagggcgatcgtctggccgagtgggacccgttcaccatgccg
gtgatcacggaaaaccccggtgtcgtgaagtatgtcgatctgatcgagggcaagaccctg
gtcgagcaggcagacgaagccaccggcatctcgcagcgcgtgatcatcgaatatcgcgcc
gcgaccaagtcgaaggaggatctgcgtccgcgcctgaccctgctcgactcggactcgggt
gaagccggccgttacatgcttgcaccgggcgccacgctctcggtcgaggacggcgcgcag
gtttccggcggtgacgttctggctcgtgtcagccgcgaagctgccaagacccgcgacatc
accggcggtctgccgcgggtggcggagctgttcgaagcacgcaagccgaaggaaaatgcg
atcatcgcgaaggtctcgggccgtgtcgtgttcggcaaggactataaggccaagcgcaag
atcggcattcagcccgaggatggcggcgaggtcgtcgagtatctggtgcccaagtcgaag
gtgatcgacgttcaggaaggcgactacgtcaagcgtggcgacaacctgatcggcggcagc
cccgacccgcacgacattctcgaagtgctcggcatcgagccgctggcggaatatctcgtc
tcggaaatccaggaagtttatcgacttcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcaaaaggtcgagatcaccgatggcggcgataccacgctg
ctggcgggcgagcaggtcgatcgcgacgagatggatgcgatcaacgacaagctcgacaag
aaggagcgtcgtgcacagggcaagcccgtcctgctcggcatcaccaaggcgtcgctgcag
acccgcagcttcatctcggcggcgtcgttccaggagaccactcgcgtcctcaccgaggcg
gcggtccagggcaagcaggacacgctgatcggcctcaaggagaacgtgatcgtcggtcgt
ctcatccccgccggtaccggcgcgggcatgaaccgtctgcgcgtcgcggcctccagccgt
gatgccgccctgcgcgtccagcagcgtcgtctgcaggaagtgctgatcgcgccgaattcg
gcggcggaagagcgtgcggccgagaagctgcgcgacgtcgccgacgataccggcagcgat
gccctggcctcggtcgtgaccagcggcaccggcaccgatgccgatgcgggcgagtatctg
atcaaggaatga
DBGET
integrated database retrieval system
