Sphingomonas alpina: H3Z74_12175
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Entry
H3Z74_12175 CDS
T07078
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spap
Sphingomonas alpina
Pathway
spap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3Z74_12175 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spap03019
]
H3Z74_12175 (rnr)
03016 Transfer RNA biogenesis [BR:
spap03016
]
H3Z74_12175 (rnr)
Enzymes [BR:
spap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H3Z74_12175 (rnr)
Messenger RNA biogenesis [BR:
spap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3Z74_12175 (rnr)
Transfer RNA biogenesis [BR:
spap03016
]
Prokaryotic type
tRNA degradation factors
H3Z74_12175 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
FaeA
WHD_RNase_R
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
QNQ07590
UniProt:
A0A7H0LD37
LinkDB
All DBs
Position
complement(2631920..2634145)
Genome browser
AA seq
741 aa
AA seq
DB search
MPKNNAPKPTPGLPTREQILDFIATSNTPAGKREIAKAFGLTAQQKITLKAMLKDMADEG
LIDSAPGRAFHKMGGVPKVTVLRIVDADDGGNVWAVPENWQAEAPAPRLRVRERKRGALG
VGDRILARTEEAGNGWIAHPMKALARGEELILGVLRQEGSKLWLQGVEKKERREFQVSDA
GEGKPGDLVLAEKAGRPPRITARVTEVLGDPFAPRSFSLIAIHKLGIPTVFSPETIEGAE
KVARTPLGDDREDLRHVPIVAIDPADARDHDDAVWATRDDDPKNEGGWKAIVAIADVSFY
VRPGSDLDREARRRGNSVYFPDRVVPMLPEVLSADVCSLKEGADRGALVCHMQIGKSGEL
KSWRFTRAVVRIAANIAYEDAQAAIDGEIEHPLTETALKPLWACWHALYKAREKRSPLDL
DLPERRVVLDEKGRIMSVAPRERLDAHKLIEDYMIAANVAAAKALEAKKAPVMYRVHEEP
SREKLVALKDYLKTFGVEFALGQVVRPATFNHILDKVGEVDFRQQVMEQVLRTQTQAYYA
PANHGHFGLALGSYAHFTSPIRRYADLIVHRALVSAYKLGPGGLTEGEAAGMERIGEGIS
ALERRAMEAERDTIDRYVAAFLAERVGQVVETRITGVTNFGFFATVEGIGGDGLMPVRDI
GGEYFRFDEAARKLVGEHSGTEYASGQRLSLRLAEANPVSGALRFEMVDGKGASPERDVK
PARVIKRRGRPANIRHQGRKR
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgcctaagaataatgcgcccaaaccaactcccggcctaccgacgcgcgagcagattctc
gatttcatcgccacctcaaacacgccggcgggcaagcgcgagatcgccaaggcgttcggc
ctgaccgcacagcagaagatcacgctcaaggcgatgttgaaggacatggccgatgaaggg
ctgatcgacagcgcgcctggccgcgccttccacaagatgggcggggtgcccaaggtgacc
gtgctgcgcatcgtcgatgccgatgacggcggcaatgtctgggccgtgccggagaattgg
caggccgaggcgccggcgccgcggctgcgcgtccgcgaacgcaagcgcggtgcgctggga
gtgggcgaccgcattctcgcgcgcaccgaagaggccgggaatggctggatcgcgcacccg
atgaaggcgctggccaggggcgaggagctgatcctcggcgtgctgcggcaggaaggcagc
aagctctggctgcagggcgtcgagaagaaggaacggcgtgaattccaggtttcggatgcg
ggcgaaggcaagcccggcgacctggtcctggcggagaaggccggccggccgccgcgcatc
actgcgcgcgtgaccgaagtactgggcgatcccttcgcgccgcgcagcttctcgctgatt
gcgatccacaagctcggcatccccacggtcttttcgcccgagacgatcgagggggccgag
aaggtcgccaggacaccgctgggcgatgaccgtgaggatctgcgccatgttccgattgtc
gcgatcgatccggcggatgcgcgcgaccatgacgatgcggtctgggcgacccgggacgac
gacccgaagaacgagggcggctggaaggcgatcgtcgcgatcgccgatgtcagcttctat
gtccgccccggatccgacctcgatcgcgaagcgcggcggcgcggcaattcggtctatttc
cccgaccgcgtcgtgccgatgttgccggaggtgctgtcagcggacgtgtgttcgctgaag
gaaggcgcggatcgcggcgcgctcgtctgccatatgcagatcggcaaatcgggcgagctg
aaatcctggcgcttcacccgcgctgtggtgcggatcgccgccaatatcgcctatgaggac
gcgcaggcggcgatcgatggcgagatcgagcatccgctgaccgaaactgcgctgaagccg
ctctgggcatgctggcacgcgctttacaaagcgcgcgagaagcgcagcccgctcgatctc
gacttgcccgaacgccgcgtcgtccttgacgagaaaggccgcatcatgtcggttgcgcca
cgcgagcggctcgacgcgcacaagctgatcgaggattacatgatcgccgccaatgtcgcg
gcggccaaggcgctcgaggcgaagaaggcgccggtcatgtaccgtgtgcatgaagagccg
agccgcgagaagctggtcgcgctcaaggactatctcaagaccttcggcgtcgagttcgcg
ctcggccaggtcgtgcgcccggcgaccttcaatcatattctcgacaaggtcggcgaggtc
gatttccgccagcaggtgatggagcaggtgctgcgtacccagacccaggcctattacgcc
cccgccaatcacggccatttcgggttggcgctgggcagctatgcgcacttcacctcgccg
atccggcgctatgccgacctgatcgtccaccgcgctctggtcagcgcctacaagctcggc
ccgggcgggctgaccgaaggcgaggccgccggcatggagcggatcggcgaagggatctcc
gcgctcgagcgccgcgcgatggaggcggagcgcgacacgatcgaccgttatgtcgcggcc
ttccttgccgaacgcgtggggcaggtggtcgagacgcgtattacgggcgtgaccaatttc
ggtttcttcgcgaccgtcgaggggattggcggcgacggcctgatgcccgtgcgcgatatc
ggcggcgaatatttccgcttcgacgaggcggcccgcaaactggtcggcgagcatagcggc
accgaatatgccagcgggcagcgcctctcgctgcgccttgccgaggcgaatcccgtatcg
ggtgcgctgcgcttcgagatggtcgatggcaagggagcgtcaccggagcgcgatgttaaa
cctgcgcgagtgatcaagcggcgcggtcggccggcgaatatccggcatcagggacgcaag
cgatga
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integrated database retrieval system
