Sphingomonas alpina: H3Z74_19230
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Entry
H3Z74_19230 CDS
T07078
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spap
Sphingomonas alpina
Pathway
spap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3Z74_19230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spap03019
]
H3Z74_19230
Enzymes [BR:
spap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3Z74_19230
Messenger RNA biogenesis [BR:
spap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3Z74_19230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
CMS1
DUF8086
DUF6362
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QNQ08827
UniProt:
A0A7H0LGM4
LinkDB
All DBs
Position
4145489..4146916
Genome browser
AA seq
475 aa
AA seq
DB search
MSFAHLGLAEPLVRALEAKGYTTPTPIQKQSIPTLLEGRDLLGIAQTGTGKTAAFVLPSI
QRLVNEEKRVLPTHCRMLVLAPTRELASQIADSARDYGKFSKMSVATVFGGTSINKNRQD
MARGVDILVATPGRLLDLIEQRFVSLATLEILVLDEADQMLDLGFIHALRKIVRMLPKQR
QTLFFSATMPNAIRELADQFLKDPVTVKVAPVSTTAERVDQHVTFINQAEKQALLTILLR
DESVERALVFTRTKHGADRVVKLLGHAGILANAIHGNKSQPQRERALAEFKAGKARVLVA
TDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGASGVAISFCASDERPYLRDIE
KLTRVKPNVMELPEGFTAEAAKIKANRPAGADDERRRDDSGRHRAPPRATHAARPTGQRA
EGAGRPGGGRPEGAGRPAGGHRPGGPGRPGGNAGRPAGGGPRRQHSGGGRRSPAA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgcacatctcggccttgccgaacccctggtccgcgctctcgaagcaaagggc
tatactacccccaccccgatccagaagcagtcgatcccgaccttgctcgagggccgcgac
ctgcttggtatcgcgcagaccggcaccggcaagaccgccgcgttcgtgctcccgtcgatc
cagcgcctcgtcaatgaggaaaagcgcgtcctgccgacgcattgccgcatgctcgtgctc
gcaccgacgcgcgaactggccagccagatcgccgacagcgcacgcgactacggcaagttc
tccaagatgtcggtcgcaaccgtgttcggcggcaccagcatcaacaagaaccgccaggac
atggcgcgcggcgtcgacatcctggtcgccacgccgggccgtctgctcgacctgatcgaa
cagcgcttcgtcagcctggcgacgctggaaatcctcgtcctggacgaggccgatcagatg
ctcgacctgggcttcatccatgcgctgcgcaagatcgtccgcatgctgcccaagcagcgc
cagaccctgttcttctcggcgacgatgcccaatgcgatccgcgagctggccgaccagttc
ctcaaggatccggtgaccgtgaaggtcgcgccggtatcgaccaccgccgagcgcgtcgac
cagcatgtcaccttcatcaaccaggccgaaaagcaggcgctgttgaccatcctgttgcgc
gacgagagcgtcgagcgcgcgctggtctttacccgcaccaagcatggcgccgaccgcgtc
gtgaagctgctcggccatgccggcatcctcgccaacgccatccatggcaacaagagccag
ccgcagcgcgagcgggcgctggccgagttcaaggcgggcaaggctcgggtgctggttgcg
accgacatcgccgcgcgcggcatcgacgtgtcgggcgtgagccatgtgttcaacttcgaa
ctgcccaatgtgcccgagcaatatgtccaccgcatcggccggaccgcacgggccggcgcg
agcggcgtggcgatcagcttctgcgcgagcgacgagcgtccgtatctgcgcgacatcgag
aagctgacgcgcgtcaagccgaacgtgatggaattgcccgagggcttcaccgccgaggcg
gcgaagatcaaggccaaccgcccggccggcgccgatgacgagcgccgtcgcgacgatagc
ggccgtcaccgcgcgccgccgcgcgcaacgcatgctgcgcgcccgaccggccagcgtgcc
gagggtgcgggtcgcccgggcggtggtcgtcctgaaggtgccggtcgtccggccggtggc
catcggcccggtggtccgggccgtcccggcggcaatgccggccgtcctgctggtggcggt
ccgcgtcgtcagcattcgggcggcgggcgccgttcaccagcggcttaa
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