Sphingomonas alpina: H3Z74_19645
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Entry
H3Z74_19645 CDS
T07078
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
spap
Sphingomonas alpina
Brite
KEGG Orthology (KO) [BR:
spap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spap03016
]
H3Z74_19645
Enzymes [BR:
spap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
H3Z74_19645
Transfer RNA biogenesis [BR:
spap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
H3Z74_19645
Prokaryotic type
tRNA splicing ligases
H3Z74_19645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QNQ08896
UniProt:
A0A7H0LGU3
LinkDB
All DBs
Position
4238058..4239284
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AA seq
408 aa
AA seq
DB search
MTEVNFDYQHVEGGVPIKMWTRGVPVDDKARAQLARAAQMPFIFKHVAAMPDVHVGIGAT
VGSVIPTKGAIIPAAVGVDIGCGMMAARTSLVASDLPDNLEGVRAAIERAVPHGRSVGRG
NRDTGSWGDPPPAIVEAWATLLARFEAITAKYPRLKNTNNLVHLGTLGTGNHFIEMCLDT
EQRVWVMLHSGSRGVGNAIGSYFIELAKQDMRKWHINLPDQDLAYFPEGTDHFDDYVEAV
GWAQDYAALNRRMMMTNVIRAIRGEITKPFDAELEAVNCHHNYVSRENHFGENVLVTRKG
AVRAAKGVLGIIPGSMGAKSFIVRGLGNAESFDSCSHGAGRVMSRTEAKKQVSLAEHIAA
TEGVACRKDVGVIDESPRAYKPIEAVMAAQADLVEIVHTLKQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaagtgaatttcgattaccagcatgtcgagggcggggttccgatcaagatgtgg
acgcgcggcgtgccggtcgacgacaaggcgcgcgcgcagctcgcccgcgcggcgcagatg
ccgttcatcttcaagcatgtcgcggcgatgcccgacgtgcatgtcgggatcggcgcgacc
gtcggctcggtcattccgaccaagggcgcgatcatcccggctgcggtcggggtcgatatc
ggctgcggcatgatggcggcgcgcacctcgctcgtcgccagcgacctgcccgacaacctc
gaaggcgtgcgcgccgcgatcgaacgcgccgtcccgcatggccggtcggtcggacgcggc
aaccgcgacacgggatcatggggcgatccgccgccggcgatcgtcgaggcctgggcgact
ctgctcgcccggttcgaggcgatcacggcgaaatatccgcgtctgaagaacaccaataat
ttggtgcacctcggcacgctcggcacgggcaaccacttcatcgaaatgtgcctcgatacc
gagcagcgggtgtgggtcatgctccattcggggtcgcgcggcgtgggcaatgcgatcggc
agctacttcatcgaactggccaagcaggacatgcgcaaatggcacatcaacctgcccgac
caggacctcgcttacttcccggaagggaccgaccatttcgacgattatgtcgaggcggtc
ggctgggcgcaggattatgcggcgctcaatcgccgcatgatgatgacgaacgtgatccgc
gccattcgtggtgagatcaccaagccgttcgacgccgagctggaagcggtcaactgccac
cacaattatgtgtcgcgggagaatcatttcggcgagaatgtgctggtcacccgcaagggg
gcggtgcgcgcggcgaagggcgtgctggggatcatcccggggtcgatgggcgcgaaatcg
ttcatcgttcggggtctcggcaatgcggagtcattcgacagctgcagccatggcgcgggg
cgcgtgatgtcgcgcaccgaggctaagaagcaggtgtcgctggccgaacatatcgccgcg
accgagggcgtggcgtgtcgcaaggatgtcggcgtgatcgacgaaagtccccgcgcctac
aagccgatcgaagccgtgatggcggcccaggccgacctagtggagatcgtccacacgctg
aagcaggtggtgtgcgtgaaggggtga
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