Sphingomonas alpina: H3Z74_20570
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Entry
H3Z74_20570 CDS
T07078
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
spap
Sphingomonas alpina
Brite
KEGG Orthology (KO) [BR:
spap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
H3Z74_20570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spap03019
]
H3Z74_20570
03009 Ribosome biogenesis [BR:
spap03009
]
H3Z74_20570
04131 Membrane trafficking [BR:
spap04131
]
H3Z74_20570
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
spap04147
]
H3Z74_20570
Messenger RNA biogenesis [BR:
spap03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
H3Z74_20570
Ribosome biogenesis [BR:
spap03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
H3Z74_20570
Membrane trafficking [BR:
spap04131
]
SNARE
SNARE associated proteins
Others
H3Z74_20570
Autophagy
Aggrephagy
Other aggrephagy associated proteins
H3Z74_20570
Exosome [BR:
spap04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
H3Z74_20570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
nSTAND3
RNA_helicase
NACHT
NPHP3_N
AAA_28
AAA_18
DUF815
AAA_7
Mg_chelatase
AAA_24
ABC_tran
AAA_30
Sigma54_activat
AAA_11
Zeta_toxin
AAA_25
TsaE
AAA_17
AAA_3
Parvo_NS1
NB-ARC
AAA_lid_PRS2_C
PhoH
SLFN-g3_helicase
ATPase
Viral_helicase1
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
QNQ09054
UniProt:
A0A7H0LHA1
LinkDB
All DBs
Position
4426504..4428798
Genome browser
AA seq
764 aa
AA seq
DB search
MADSESPVHKLQVANARPEDSGRGLAHIPRALMAALGLAEGDVIEIVGKSTTPARAVSPY
QEDEGLEIIRIDGLQRANAGAGAGDFVEVRKVESKPATRVVFAPAQQNLRLEGSSNALKR
TFFGRPLCQGDVVATAGQQRVDNMPPGVQQFLRAPAYALQEIRLSVIATSPKGVVHVDEN
TEIELRPEYEEPKEARRADVTYDDIGGMGPTIDQLREMVELPLRYPELFQRLGVDPPKGV
LLHGPPGTGKTRLARAVANESAAEFFLINGPEIMGSAYGESESKLRQVFEEAAKASPSIV
FIDEIDSIAPKRGQVSGEAEKRLVAQLLTLMDGLEARANVVVIAATNRPEAIDEALRRPG
RFDREIIVGVPDERGRREILGIHTRGMPLGDKVDLGELARTTYGFVGADLAALAREAAIE
AVRKIMPRLNLAEGTIPPEVLDTLAVTREDFLDALKRVQPSAMREVMVEAPRVRWEDVGG
LDKAQMRLKEGVELPLKDPDAFRRLGIRPAKGFLLYGPPGTGKTLLAKAVAREAEANFIA
TKSSDLLSKWYGESEQQIAKLFSRARQVAPCVIFIDELDSLVPARGGGLGEPQVTERVVN
TILAEMDGLEELQSVVVIGATNRPNLIDPALLRPGRFDELIYVGVPDKDGRRRILAIQTG
KMPLADDVDLDSLAERTDRFTGADLEDLVRRAGLVALRQSLSVAQVSMAHFEEALDESRA
SVTPDMERDYEQMASRLKQDAAALQPIGFISPGQLRPRGPKGAD
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggccgatagcgaatcaccggtccacaaattgcaagtcgccaatgcccggcccgaagac
agcggccgtggcctggcgcatatcccccgcgccctgatggcggccctcggcctcgccgag
ggcgatgtgatcgagatcgtcggaaaatccaccaccccagcccgcgccgtctcgccttac
caggaggatgaggggctcgagatcatccgcatcgacgggctgcagcgcgccaatgccggc
gccggcgccggcgatttcgtcgaagtgcgcaaggtcgaatccaaaccggcgacccgcgtc
gtttttgcgcccgcgcaacagaatctccggctcgaagggtcatccaacgcgctgaagcga
acctttttcggtcgaccgctgtgccagggcgatgtcgtcgccaccgctggccagcagcgc
gtcgacaatatgcctccgggcgtccagcaattcctccgtgcgccggcctatgctctgcag
gagatccgcctgtcggtgatcgcgaccagccccaagggcgtggtccatgtcgacgaaaat
accgagatcgaactgcgtcccgaatatgaggagcccaaggaagcacgccgcgccgacgtc
acctatgacgatatcggcggcatgggcccgacgatcgaccagttgcgcgaaatggtcgag
ctgccgctgcgctaccctgaactgttccagcggctcggcgtcgatccgcccaagggcgtg
ttgctgcatgggccgcccggaaccggcaagacgcgcctggcgcgcgcggtcgccaatgaa
agcgcggccgaattcttcctgatcaacggtcccgagatcatgggatcggcttacggcgaa
tccgaaagcaagctgcgccaggtattcgaggaagcggccaaggcatcaccgtcgatcgtg
ttcatcgacgagatcgattcgatcgcacccaagcgcggccaggtgtcgggcgaggcggag
aagcgcctggtcgctcagctgctgacgctgatggacgggctggaggcacgcgccaatgtc
gtggtgatcgccgcgaccaaccggcccgaggcaatcgacgaggcgctgcgccggcccggc
cggttcgaccgcgaaatcattgtcggcgtgccggacgaacgcggccgccgcgagatcctc
ggcatccatacgcgtggcatgccgctcggcgacaaggtcgatctcggcgaacttgcccgg
accacctatggctttgtcggtgccgatctcgctgccctggcgcgcgaagcggcgatcgag
gctgtgcgcaagatcatgccgcggctcaaccttgctgaaggcacgattccgcctgaagtg
ctcgatacgctggcggtgacgcgcgaggatttcctcgatgcgctgaaacgcgtccagccg
agcgcgatgcgcgaggtgatggtcgaggcgccacgcgtgcgatgggaggatgtcggcggg
ctcgacaaggcgcagatgcggctgaaggaaggcgtggaactgccgctcaaggatccggat
gcgttccgccgcctgggcatccgaccggccaagggcttcctgctctacggcccgcccggc
accggcaagacgctgctcgccaaggcggtcgcgcgcgaggcggaggcgaatttcatcgcc
accaaatcgtccgacctgctgagcaaatggtatggcgaaagcgagcagcagatcgccaaa
ttgttcagccgcgcccgccaggtcgcgccgtgcgtgatcttcatcgacgaactcgattcg
ctcgtccccgcacgcggtggtggtcttggcgaaccgcaagtcaccgaacgggtggtcaac
accatcctcgccgagatggatgggcttgaggagttgcagtcggtcgtcgtgatcggcgcg
accaaccggccgaacctgatcgatccggcgctgcttcgtcccggccgcttcgacgaactc
atctatgtcggcgtgcccgacaaggatggccgccgccgcatcctggcgatccagaccggc
aagatgccgctggccgatgatgtcgatctcgattcgctcgccgagcggaccgatcgcttc
accggcgccgatcttgaggatctggtgcgccgggccggcctggtggcgttgcgtcagtcg
ctcagcgtcgcgcaggtgtcgatggcgcatttcgaggaagcactggacgaatcgcgcgcc
tcggtcacgccggacatggaacgcgattatgagcagatggcatcgcgcctgaagcaggat
gcggcggcgctgcagccgatcggcttcatctcgcccggtcagttgcgcccgcgcgggccg
aagggagcggattga
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