Stenotrophomonas pavanii: STNY_R00800
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Entry
STNY_R00800 CDS
T07567
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spaq
Stenotrophomonas pavanii
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spaq03032
]
STNY_R00800
03400 DNA repair and recombination proteins [BR:
spaq03400
]
STNY_R00800
Enzymes [BR:
spaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
STNY_R00800
DNA replication proteins [BR:
spaq03032
]
Prokaryotic type
DNA Topoisomerases
STNY_R00800
DNA repair and recombination proteins [BR:
spaq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
STNY_R00800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
BCX41933
LinkDB
All DBs
Position
94381..95439
Genome browser
AA seq
352 aa
AA seq
DB search
MPTPSSPERQAARAAGLRYVDDTQPGISRRRAGQGFSYRDADGHVVRDAATLQRIRALAI
PPAYTAVWICAHANGHLQATGRDARGRKQYRYHADWAKERDAGKFDRIIASGDALPTLRR
RLSRDLKRPGFPREKVLAMVVALLADTLVRVGNETYAQQNRSFGLTTLRNRHLELLRGGR
VRMRFRGKSGQLQEVTVGDRRLGLLVRRLQQLPGQALFQYRDDEGALQPVDSGAVNDYLR
EVMGEDFTAKDFRTWGGTVAAVQAFAATELPEPASQRALAQAQRSVVCQVAARLGNTPAV
CRKAYIDPCVFAGWERGELAALAGLRGPRQWEQATLRVLRRARRLSRRRQPQ
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgccaaccccctcttcccccgaacgacaggccgcgcgcgcggccggcctgcgctatgtc
gatgacacccagccgggcatcagccggcgccgcgccggccagggcttcagctaccgcgac
gcggacggtcacgtggttcgcgacgcggccaccctgcagcgcatccgcgcactggccatt
ccaccggcctacaccgccgtgtggatctgcgcccacgccaacggccacctgcaggccacc
ggccgcgatgcgcgcgggcgcaagcagtaccgttaccacgccgactgggcgaaagagcgc
gacgccggcaagttcgaccgcatcatcgcctctggcgacgccctgcccacgctgcggcga
cggctgtcgcgggacctgaagcgtccagggtttccgcgcgaaaaggtgctggcgatggtg
gtcgcactgctggccgacacgctggtgcgggtcggcaatgaaacctatgcccagcagaac
cgttcattcgggctgaccaccctgcgcaaccgccatctggagctgttgcggggtgggcgg
gtgcgcatgcgtttccgaggcaagtccggccagctgcaggaagtgaccgtgggtgatcgc
cggctggggctgctggtgcggcgcctgcagcagctgccgggccaggcgctgttccagtac
cgcgacgatgaaggtgcgctgcagccggtggattcgggtgcagtgaacgattatctgcgc
gaagtgatgggcgaagatttcacggccaaggatttccgcacctggggcggcaccgtggcc
gcagtgcaggcgtttgccgccaccgagctgccggaaccggccagccagcgtgcgttggcg
caggcacagcgcagcgtggtgtgccaggtcgcggcgcggttgggcaacacaccggccgtg
tgccgcaaggcctacatcgacccgtgcgtgtttgccggctgggagcgcggtgaactggcg
gcactggccggcctgcgtgggccgcgccagtgggagcaggccaccctgcgcgtattgcgc
agggcgcgccggctcagccgccgtcgtcagccgcaatag
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