Stenotrophomonas pavanii: STNY_R13380
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Entry
STNY_R13380 CDS
T07567
Name
(GenBank) DNA-3-methyladenine glycosylase 2 family protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STNY_R13380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
spaq03000
]
STNY_R13380
03400 DNA repair and recombination proteins [BR:
spaq03400
]
STNY_R13380
Enzymes [BR:
spaq01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
STNY_R13380
Transcription factors [BR:
spaq03000
]
Prokaryotic type
Helix-turn-helix
AraC family
STNY_R13380
DNA repair and recombination proteins [BR:
spaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
STNY_R13380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
CobS_N
Motif
Other DBs
NCBI-ProteinID:
BCX43157
LinkDB
All DBs
Position
complement(1458490..1459968)
Genome browser
AA seq
492 aa
AA seq
DB search
MDTALALDIAACDRARLARDARFDGVFFTAVRSTGIYCRPVCPAPPPKPRNISYFPTAAA
ASAAGYRPCLRCRPELAPQAQQALAGQAVQRALALIHGGFLQEHAVADLARKIGLSARQL
QRLFVEHLGATPGQLHATHRLLLAKQLLTETTLPVTDVALAAGYNSLRRFNTAFLQGCGM
APSALRRQHPPLAAEDDGLVLRLAYRPPLDFARMLAFLRKRSLPGIELIGEDSYQRVLGT
PERPTLLRVTADPKRPELRLQLGAVDPRLIPDIVRRVRRVFDLDADLQQVHAALAEEPLL
ARGIAERPGLRVPGGWDGFEVGVRAVLGQQVSVAAATTFARRLVDAYGAHLPGMPPAFDR
QFPAPAMLAEAPLESIGLPRSRAATVRALAAACASGQLDFGPGQAVEEFVARCVALPGIG
PWTAHYIALRGLGQPDAFPAGDLVLQQVLGHARGQRLSERATEARSQPWRPWRAYAVLHL
WHLSGTFVGEPT
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgctctcgccctcgacattgccgcctgtgatcgggcccgcctggcccgcgac
gcacgcttcgacggcgtgttcttcaccgccgtgcgcagcaccggcatctactgccgcccg
gtgtgcccggccccgccaccgaagccgcgcaacatcagctattttccgaccgccgctgcg
gcctccgccgccggctaccggccgtgcctgcgctgccgccccgaactggcaccacaggcg
cagcaggcgttggccgggcaggccgtgcagcgcgccctggcgctgatccacggtggattc
ctgcaggaacacgccgtcgctgacctcgcgcggaaaatcggactcagcgcgcgccagctg
cagcgcctgtttgtcgagcacctgggcgcgacgcccggacagctccatgccacccaccgc
ctgctgctggccaagcagctgctgaccgaaaccacgctgccggtgaccgacgtcgcactg
gccgccggctacaacagcctgcgccgtttcaataccgccttcctgcagggctgcgggatg
gcgccgagcgcactgcgtcgccagcacccgccgttggccgcagaggatgacggcctggta
ctgcgtctggcctatcggccccccctggattttgcgcgcatgctggccttcctgcggaag
cgcagcctgcccggcatcgagctgatcggcgaggacagctaccagcgcgtgctcggcaca
cccgagcgccccaccctgctgcgcgtcaccgccgacccgaagcgcccggagctgcgcctg
cagctgggagcagtcgatccacgcctgatcccggacatcgtgcgccgcgtgcgtcgcgta
ttcgatctggatgccgacctgcagcaggtccacgccgcgctggccgaagaaccgctgctg
gcgcgcggcatcgccgaacggcccgggctgcgcgtgcccggcggctgggatggcttcgag
gtgggtgtgcgtgccgtgctcggccagcaggtcagcgtggccgcggccaccaccttcgcg
cggcgcctggtcgatgcctacggcgcacacctgccgggcatgcccccggcattcgatcgc
cagttcccggcacctgcgatgctggccgaagcaccgctggaatcgatcggcctgccccgc
agccgcgcggccaccgtgcgcgcactggccgcggcctgcgccagcggccagctcgacttc
gggcctggccaggccgtggaggagttcgttgcgcgctgcgttgcactgcccggcatcggc
ccgtggaccgcgcattacatcgccctgcgcgggctcggccagcccgatgcgttcccggcc
ggcgatcttgtactgcagcaggtcctcggccacgcgcggggccagcgcctgagcgaacgt
gcgaccgaagcgcgctcgcaaccgtggcgcccgtggcgcgcctacgccgtgctgcacctg
tggcacctgtccggcacctttgttggagaaccgacatga
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