Stenotrophomonas pavanii: STNY_R14140
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Entry
STNY_R14140 CDS
T07567
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STNY_R14140 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaq03019
]
STNY_R14140 (rnr)
03016 Transfer RNA biogenesis [BR:
spaq03016
]
STNY_R14140 (rnr)
Enzymes [BR:
spaq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
STNY_R14140 (rnr)
Messenger RNA biogenesis [BR:
spaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
STNY_R14140 (rnr)
Transfer RNA biogenesis [BR:
spaq03016
]
Prokaryotic type
tRNA degradation factors
STNY_R14140 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BCX43230
LinkDB
All DBs
Position
1545764..1548229
Genome browser
AA seq
821 aa
AA seq
DB search
MTTKKPSKGGKPSRGQAPNKGAKAGAARTTKPGKPLPGWFPELNEGSAPPRGRKARGADA
AAPGPAPGRKLPPAGKVIDDPYAAREAEKYEQPIASREAILALLERCEGPQTAEELGARL
GLTAPDRAEALSRRLGAMVRDGQLVQNRRGGFAPIQTLNLVTGVVIANPEGFGFLRPVEG
GDDLFLPPYEMRKVMHGDKVLARVTGIDHRGRREGSIARVLERGMTRLIGRFSVEMGINY
VVPDDKRVQRNVQVPPDQTGGARDGQLVVCELTQAPDSRRPPIGRIIAVLGDKLTASLVV
ETAIHGHELPFEFPQEVLDEAASVPLVVEPAMIGDRVDLRSTPLVTIDGEDAKDFDDAVY
CEPNADGFRLVVAIADVSNYVRPGTPLDEEAQKRATSVYFPGFVVPMLPETLSNGICSLM
PKVDRMCFVCDMQIDRDGLVTHSRFYEAVMNSHARLTYTQVWKAVGEDDAETQAWMGDLL
PHVQRLHQLYKVLSKARAKRGAIEFESSEVRFVLDNRGEVTQAGMLVRNDAHKLIEECMI
AANVEAAKYLLSRHVPAPYRIHEKPPETKYADLLEFLKEFKLSLPPWSKVRPGDYTKLLK
KIRDRPDATLLESVLLRSQSLAIYSPENHGHFGLALEAYAHFTSPIRRYPDLLVHRAIKH
ALSGKPLDKFTYNAREMAALALQCSERERRADEAEREVDERYRAAWMEKHVGGQFDGVIS
GVTSFGLFVELDESKVQGLVHVTQLPQDYYKFDATRKTLTGERRGSSYRLGDRVRILVLK
ASMEERKIDFRLVEHKDEDEGESLPPLPERGKPAKRKKEKY
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgactaccaaaaaaccaagcaagggcgggaagccatcccgcggccaggccccgaacaag
ggcgccaaggcgggcgcagcccgcaccaccaagccgggcaagccattgccgggctggttt
cccgaattgaatgaaggcagcgcaccgccgcgcggccgcaaggcccgaggcgccgacgcc
gcggcacccggcccggccccgggccgcaagctgccgccggccggcaaggtgatcgacgat
ccctatgccgcccgcgaagccgagaagtacgaacagcccatcgccagccgcgaggccatc
ctggccctgctggagcgttgcgaggggccgcagacggcagaggaactgggcgcacgcctg
gggctgaccgccccggaccgtgccgaagcactgtcgcgccggctcggcgccatggtccgc
gatggccagctggtgcagaaccgccggggcggcttcgccccgatccagaccctgaacctg
gtcaccggcgtggtgatcgccaacccggaaggattcggtttcctgcgtccggtcgagggc
ggcgacgacctgttcctgccgccgtatgaaatgcgcaaggtcatgcacggtgacaaggtg
ctggcccgcgtgaccggcattgaccaccgtggccgccgcgaaggcagcatcgcccgcgtg
ctggagcgcggcatgacccgcctgatcggccgtttcagtgtcgagatgggcatcaattac
gtggtgcctgacgacaagcgcgtgcagcgcaacgtgcaggtgccgccggaccagaccggc
ggtgcgcgcgatggccagctggtggtctgcgaactgacccaggcaccggacagccgccgt
ccgccgatcggccgcatcattgccgtgctcggcgacaagctgaccgcttcgctggtggtg
gaaaccgccatccacggccatgaactgccgttcgagttcccgcaggaggtgctggacgaa
gccgcctcggtgccgctggtggtcgagccggcgatgatcggcgaccgcgtcgacctgcgc
agcacgccgctggtcaccatcgacggtgaagatgccaaggacttcgacgacgcggtgtac
tgcgagccgaatgccgatggcttccgcctggtggtggcgattgccgatgtctccaattac
gtccgccccggcacgccgctggacgaagaggcgcagaagcgtgccacctcggtgtacttc
ccgggcttcgtggtgccgatgctgccggagacgctgtccaacggcatctgctcgctgatg
ccgaaggtggaccgcatgtgtttcgtctgcgacatgcagatcgaccgcgatggcctggtc
acgcattcgcgcttctacgaagccgtgatgaactcgcacgcgcgcctgacctacacccag
gtgtggaaggcggtgggcgaggacgatgccgagacccaggcctggatgggggatctgttg
ccgcacgtgcagcgcctgcaccagctgtacaaggtgctgtcgaaggcgcgcgccaagcgc
ggcgccatcgaattcgaaagcagcgaagtgcgcttcgtgctggacaatcgcggtgaagtc
acccaagccggcatgctggtgcgcaacgacgcgcacaagctgattgaggaatgcatgatc
gcggccaacgtcgaggcggcgaaatacctgctgtcgcgccacgtgccggcgccgtaccgc
atccacgagaaaccaccggaaaccaagtacgccgacctgctcgagttcctcaaggagttc
aagctgagcctgccgccgtggtcgaaggtgcgcccgggcgattacaccaagctgctgaag
aagatccgtgaccgccccgatgccacgctgctggagtcggtgctgctgcgcagccagagc
ctggccatctacagcccggagaaccacggccacttcggcctggcgctggaggcgtacgcg
cacttcacttcgccgatccgccgctaccccgacctgctggtgcaccgcgcgatcaagcat
gcgctgtccggcaagccactggacaagttcacctacaacgcccgcgagatggccgcgctg
gcgctgcagtgctccgagcgcgagcgccgtgccgacgaagccgagcgcgaggtcgacgag
cgttaccgcgcggcgtggatggaaaagcacgtcggcggccagttcgacggcgtgatcagc
ggcgtgaccagcttcggcctgttcgtggagctggacgagtcgaaggtgcagggcctggtg
catgtcacccagctgccgcaggactattacaagttcgacgcgacccgcaagacgctgacc
ggcgagcgccgcggcagcagctaccggctgggcgaccgcgtacgcatcctggtgctgaag
gccagcatggaagagcgcaagatcgacttccgcctggtcgaacacaaggatgaggacgag
ggcgaaagcctgccgccgctgcccgagcgtggcaagccggccaagcggaagaaagagaaa
tattga
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