Stenotrophomonas pavanii: STNY_R27840
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Entry
STNY_R27840 CDS
T07567
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
STNY_R27840 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spaq03400
]
STNY_R27840 (sbcB)
Enzymes [BR:
spaq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
STNY_R27840 (sbcB)
DNA repair and recombination proteins [BR:
spaq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
STNY_R27840 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
STNY_R27840 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
STNY_R27840 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BCX44577
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All DBs
Position
3003855..3005294
Genome browser
AA seq
479 aa
AA seq
DB search
MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV
TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER
EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD
VRATIGMARLFKQSQPRLWDYALKLRDKRFVGGLLDVAAMKPVLHVSMRYPASRLCAAPV
LPLAVHPTINNRVIVFDLDGDIDDLLALPAEVIAQRLYLRASELPEGVARVPLKEVHLNK
VPALIAWNHLRADDHARLGLDVAAIEAKVERLRAFAPQLAEKARQVYNQPRTATVADVDA
SLYDGFLGNGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPGSLAPAERQ
RWQDYRRQRLLGDGGLGELNLPQYRQQLDALAAEAPDDARRQALLQSLREWGQHLQETL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagcttcctgttctacgacctggaaaccttcggccaggacccgcggcgcacg
cgcatctcgcagtacgccgccatccgcaccgacgccgatctcaacgagatcgacacgccg
gtcagcttcttcgtgcggccggccgatgacctgctgccctcgccgatggccaccctggtc
accggcatcaccccgcaacaggcgctggccgagggcatcagcgaggccgaggccttcgac
cgcatcaacgaacagctgtcgcgccccggcacctgcgcactgggttacaacacgctgcgg
ttcgacgatgagttcgtccgctacggcctgttccgcaatttccatgatccgtacgaacgc
gagtggcgcaacggcaattcgcgctgggatctgctggacatgctgcgcctgatgcgggcg
atgcggcccgagggcatccagtggccgctgcgcgaggacggcgcgacgtcgttcaagctc
gaacacctggccgaagccaacaatgtgcgcgaaggcgatgcgcacgaggcgctgtcggac
gtgcgcgcgaccatcggcatggcgcggctgttcaagcagtcgcagccacggctgtgggac
tacgcactgaagctgcgcgacaagcgcttcgtcggcggcctgctggacgtggccgcgatg
aagccggtgctgcatgtttccatgcgctatcccgccagccgcctgtgcgcggcgccggtg
ctgccgctggccgtgcacccgaccatcaacaaccgggtgatcgtgttcgacctggacggt
gacatcgacgatctgctggcactgccggccgaggtgatcgcgcagcgcctgtacctgcgc
gccagcgagctgcccgagggcgtggcacgggtgccgctgaaggaggtgcatctgaacaag
gtgccggcgctgatcgcctggaaccacctgcgcgccgatgaccacgcgcgcctcggcctg
gacgtggccgcgatcgaggccaaggtggaacggctgcgcgcgtttgcgccgcaactggcc
gagaaggcccgccaggtctacaaccagccccgcaccgccaccgtagccgacgtcgatgcc
tcgctgtacgacggtttcctcggcaacggcgacaagccgctgcttgccctcgcccgcacc
accgcgccggagcagctggccgcgctggagggccgcttccgcgacccgcgcctgccggaa
ctgctgttccgctaccgcgcgcgcaaccatcccggcagcctcgcgccggctgaacgccag
cgctggcaggattaccgccgccagcgcctgctcggcgacggcgggctgggcgaactcaac
ctgccccagtaccggcagcagctcgatgcattggccgccgaagcgcccgacgatgcgcgg
cgccaggccctgctgcaatcgctgcgcgaatggggccagcacctgcaggagacactgtga
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