Stenotrophomonas pavanii: STNY_R29910
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Entry
STNY_R29910 CDS
T07567
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STNY_R29910 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaq03019
]
STNY_R29910 (pnp)
03016 Transfer RNA biogenesis [BR:
spaq03016
]
STNY_R29910 (pnp)
Enzymes [BR:
spaq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
STNY_R29910 (pnp)
Messenger RNA biogenesis [BR:
spaq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
STNY_R29910 (pnp)
Transfer RNA biogenesis [BR:
spaq03016
]
Prokaryotic type
tRNA degradation factors
STNY_R29910 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_KhpA-B
KH_PNO1_2nd
DUF7680
S1_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
BCX44778
UniProt:
A0A246L133
LinkDB
All DBs
Position
complement(3222295..3224403)
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHTVTLETGEVARQASGAVIVKMDDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLN
PDVDGDIPALIGASAALALAGTPFMGPIGAAKVGYKNGEYILNPTVSELADSQLELVVAG
TSNAVLMVESEAALLSEEVMLGAVTFGHREMQKVINAINELTVEAGTKPSTWEAPAKNDA
LISALKEAIGPRLGEAFQVRDKLQRRDAISAIKKDVFEALAGRVAAEGWNPAELSKEFGE
LEYRTMRDSVLDTKVRIDGRALDTVRPITVKTGVLPRTHGSSLFTRGETQAIVTITLGTA
RDGQVIDAVAGEYKENFLFHYNFPPFSVGECGRMMGPKRREIGHGRLAKRGVLAVMPSLE
SFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPVKAPVAGIAMGLVKEGERFVVLS
DILGDEDHLGDMDFKVAGTAEGISALQMDIKIEGITEEIMKQALQQAKAGRLHILGEMAH
GLTAPREELSDYAPRLLTIKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAIAAQAAKARIEQITSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISSDRV
EKVGDVLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGDAVSAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaatcaccaaaaccttccagtacggcaagcacaccgtcacgcttgagaccggc
gaagtcgcccgtcaggccagcggcgccgtcatcgtcaagatggacgacaccgtactgctg
gtcaccgccgtcgccgccaagagcgcgcgcgaaggccaggacttcttcccgctgaccgtc
gattatcaggaaaagttctacgccggcggccgtatcccgggtggtttcttcaagcgtgaa
ggccgtgcgaccgagaaggaaaccctgatctcgcgtctgatcgaccgtccgatccgcccg
ctgttcccggaagactacaagaacgaagtgcagatcatcgccacggtgatgtcgctgaac
ccggacgtggacggtgacattccggccctgatcggtgcctcggctgccctggccctggcc
ggcaccccgttcatgggtccgatcggcgctgccaaggtcggttacaagaacggcgagtac
atcctcaacccgaccgtcagcgaactggctgactcgcagctggaactggtcgtcgccggt
acctccaacgccgtgctgatggtcgaatccgaagccgcgctgctgtccgaagaagtgatg
ctgggcgccgtgaccttcggtcaccgcgaaatgcagaaggtcatcaacgcgatcaacgaa
ctgaccgtcgaagccggcaccaagccgtcgacctgggaagccccggccaagaacgacgcg
ctgatctccgccctgaaggaagccatcggcccgcgcctgggcgaagccttccaggtgcgt
gacaagctgcagcgccgtgacgccatctcggcgatcaagaaggacgtgttcgaagccctg
gccggccgcgtggccgccgaaggctggaacccggccgagctgtcgaaggaattcggcgaa
ctggaataccgcaccatgcgtgactcggtgctggacaccaaggtccgcatcgacggccgt
gcgctggacaccgtccgcccgatcaccgtgaagaccggcgtgctgccgcgtacccacggc
tcctcgctgttcacccgtggcgaaacccaggccatcgtgaccatcacgctgggcaccgcc
cgtgacggccaggtcatcgacgccgttgccggtgagtacaaggaaaacttcctgttccac
tacaacttccctccgttctcggtgggtgagtgcggccgcatgatgggcccgaagcgccgc
gaaatcggccacggtcgcctggccaagcgtggcgtgctggctgtcatgccgtcgctggaa
tcgttcccgtacaccatccgcgtcgtctcggaaatcaccgagtcgaacggttcttcgtcg
atggcgtcggtctgcggctcgtcgctggccctgatggacgccggcgtgccggtgaaggcg
ccggtggccggtatcgccatgggcctggtcaaggaaggcgagcgcttcgtcgtcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtggccggtaccgct
gagggcatctccgccctgcagatggacatcaagatcgaaggcatcaccgaagagatcatg
aagcaggccctgcagcaggccaaggctggccgcctgcacatcctgggcgaaatggcccac
ggcctgaccgcgccgcgtgaagagctgtcggactacgcgccgcgcctgctgaccatcaag
atccacccggacaagatccgcgaagtgatcggcaagggcggttcgaccatccaggccatc
accaaggaaaccggcacccagatcgacatccaggatgacggcaccatcgtcatcgcttcg
gtcaatgccatcgctgcccaggccgccaaggcccgcatcgagcagatcacctcggacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggtgcgttcgtc
acgatcctgccgggcaaggacggcctggtccacgtgtcgcagatctccagcgatcgcgtc
gagaaggtcggcgacgtgctgaaggaaggcgatgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgtatccgcctgtcgatgaaggccgtggaagaaggcgacgccgtcagc
gccgagtaa
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