Stenotrophomonas pavanii: STNY_R31440
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Entry
STNY_R31440 CDS
T07567
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
spaq
Stenotrophomonas pavanii
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spaq03009
]
STNY_R31440 (rlmD)
Enzymes [BR:
spaq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
STNY_R31440 (rlmD)
Ribosome biogenesis [BR:
spaq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
STNY_R31440 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
RrnaAD
MTS
Methyltr_RsmB-F
Cons_hypoth95
PCMT
Methyltransf_11
TRAM
TRM5-TYW2_MTfase
Methyltransf_23
Methyltransf_12
Methyltransf_15
UPF0020
Methyltransf_32
PrmA
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
BCX44927
LinkDB
All DBs
Position
complement(3390318..3391652)
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AA seq
444 aa
AA seq
DB search
MARSRSRTDRTPFQTEILDLSHDGRGVARREGEGGKVTFVSGALPGEVVKAEQTARSRHF
DEARTLEVLQASPQRVTPKCPHFGTCAGCVLQHLDEAQQIVAKQRVLMDNLERIGHVKPG
TVLPPLVGESWGYRRKGRFSVRRVEKKDKTLVGFREQDPRFVADLSQCLTVIPEIGTKVE
ALSTFIESLDGKRDIPQIEFIAGDQAVVLTVRHLQPLSDADRAAWAAFGQQHGFVIYLQS
GGVDTVQPLDGQGVPLSFRLVPWDVELAFRPLDFIQVNAKLNEKMIAHALDLLQPGEDER
VLDLFCGLGNFTLPLARRVREVVGVEGDAGLVARARENAERNGLANAQFFSADLTQDQRS
TPWMRQGFDKLLLDPPRSGAIEVLQQLPLKQFKRIVYVSCHPGSLARDAGYLVNEQGFTL
VSAGAMDMFPHTAHVESIAVFEKR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgatcccgctcccgcaccgaccgtaccccgttccagaccgagatcctcgacctc
agccatgatggtcgcggcgtcgcccgccgtgaaggcgagggcggcaaggtcaccttcgtc
agcggcgccctgcccggcgaggtggtgaaggctgaacagaccgcccgcagccgacatttc
gacgaggcacgcacgctggaggtgctgcaggcctcgccgcagcgggtgacgccgaagtgc
ccccatttcggcacctgtgccggctgcgtgctgcagcatctggacgaggcccagcagatc
gtcgccaagcagcgcgtgctgatggacaacctggagcggatcggccatgtgaagccgggc
accgtgctgccgccgctggtcggcgaaagctggggttaccgccgcaagggccgcttctcg
gtgcgccgggtcgagaagaaggacaagaccctggtcggcttccgtgaacaggatccgcgt
tttgtcgccgacctcagccaatgcctgacggtgattccggaaatcggcaccaaggtcgag
gcgctgtccaccttcatcgaatcgctcgatggcaagcgcgacatcccgcagatcgagttc
atcgccggtgaccaggcggtggtgctgaccgtgcgccacctgcaaccgctcagcgatgcg
gaccgcgcggcctgggcggccttcggccagcagcatgggttcgtgatctacctgcagtcc
ggcggcgtggacaccgtgcagccgctggacgggcagggcgtgccgctgtcgttccggctg
gtgccgtgggacgttgaactggcgttccgcccgctggatttcatccaggtcaatgccaag
ctcaacgagaagatgatcgcccatgccctggacctgctgcagccgggcgaggacgagcgc
gtgctggacctgttctgtggcctgggcaacttcaccctgccgctggcccgccgtgtgcgc
gaggtggtgggcgtggagggcgatgccggcctcgtcgcgcgtgcgcgtgagaacgccgag
cgcaacggcctggccaacgcacagttcttcagcgccgacctgacccaggaccagcgcagc
accccgtggatgcgccagggcttcgacaagctgctgctggatccgccgcgctcgggggcg
atcgaagtgctgcagcagctgccgctgaagcagttcaagcgcatcgtctacgtcagctgc
cacccgggctcgctggcacgcgatgccggctatctggtcaacgaacagggcttcaccctg
gtcagtgccggtgcgatggacatgttcccgcacaccgcgcacgtggaaagcatcgcggta
ttcgagaagcgctga
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