Stenotrophomonas pavanii: STNY_R37760
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Entry
STNY_R37760 CDS
T07567
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
STNY_R37760 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spaq03021
]
STNY_R37760 (rpoD)
Transcription machinery [BR:
spaq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
STNY_R37760 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
BCX45555
UniProt:
A0A246KZ53
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All DBs
Position
complement(4106936..4108789)
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AA seq
617 aa
AA seq
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MANERPAQSEIKQLISKGLEQGYLTYAEVNDHLPDDMVDPEQIEDIIGMINGMGIDVHEV
APDVETLLLNDGNTGNREVDDTAAEEAAAALSALDTEGGRTTDPVRMYMREMGTVELLTR
EGEIAIAKRIEEGLSQVQAALGQFPVSVESLLNDYEAHKEGKKRLAEVIVGFNDLVDEEP
APPVAAADDSSDADAEADEDEDDDVEGGEEEAAPTGPDPEEVAARMQALSDAFNAFKKAA
TKGDKKNLPRLREEMSAVFVTLKLPLPLTDVLTKQLRDTMASIKAHERRVLNLATVTARM
PRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALRDVKDQIIAEQQATIDIEKLTQLDLEE
LKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQYGRE
ATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENTTN
INLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEQLRSFLDID
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccaatccgaaatcaagcaactgatcagcaagggcctggaa
cagggctacctgacctacgccgaagtcaatgaccatctgccggacgacatggtcgacccg
gaacagatcgaggacatcatcggcatgatcaacggcatgggcatcgatgtccatgaagtt
gcgccggatgtggagaccctgcttctcaacgacggcaacaccggcaaccgcgaagtcgat
gacaccgcggccgaagaagccgccgctgcgctgagcgcgctcgacaccgaaggtggccgt
accaccgacccggtgcgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacccgc
gaaggcgaaatcgccatcgccaagcgtatcgaggaaggcctttcgcaggtccaggccgcc
ctcggccagttcccggtttcggtcgagtcgctgctgaacgactacgaagcccacaaggaa
ggcaagaagcgtctggccgaagtgatcgtcggcttcaacgatctggtcgacgaagagccg
gcgccgccggtggccgctgccgatgacagcagcgatgccgatgccgaagccgacgaagac
gaggacgatgatgtcgagggtggcgaggaagaagccgcaccgaccggtccggatccggag
gaagtcgctgcacgcatgcaggcgctgagcgacgccttcaatgccttcaagaaggcggcg
accaagggcgacaagaagaacctgccgcgcctgcgcgaagagatgtcggcggtgttcgtc
accctgaagctgccgctgccgctgaccgacgtgctgaccaagcagctgcgcgacaccatg
gcctcgatcaaggcccatgagcgccgcgtgctgaacctggccaccgtcaccgcccgcatg
ccgcgcaaggacttcatccgttcctgggaaggcaaccagaccaacctggagtgggtggaa
gatgcactgaagcgcaagcagaagtggtcgtcggccctgcgcgacgtgaaggaccagatc
attgccgaacagcaggcgacgatcgacatcgagaagctgacccagctggacctggaagag
ctgaaggaaatcagccgtgccatggcctatggtgaagccaaggcgcgcaaggccaagaag
gaaatggtcgaggccaacctgcgcctggtgatctcgatcgccaagaagtacaccaaccgt
ggcctgcagttcctcgacctgatccaggaaggtaacatcggcctgatgaaggcggtggac
aagttcgaataccgccgcggttacaagttctcgacctacgccacctggtggatccgccag
gcgatcacccgctcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagttgaaccgcatttcccgccagatgctccagcagtacggccgcgag
gctacgccggaggagctggccaaggaaatggacatgccggaagacaagatccgcaaggtg
atgaagatcgccaaggagccgatctcgatggaaaccccgatcggcgacgacgaggattcc
catctgggcgacttcatcgaggacaccaacgtggagtccccgatcgagaacaccaccaac
atcaacctgtctgaaaccgtgcgcgacgtgctggccggcctcaccccgagggaagccaag
gtgctgcgcatgcgcttcggcatcgacatgaataccgaccacacgctggaagaggtcggc
aagcagttcgacgtgacccgcgagcgcatccgccagatcgaagcgaaggcgctgcgcaag
ctgcgtcacccgagccgctcggagcagctgcgcagcttcctggatatcgattga
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