Stenotrophomonas pavanii: STNY_R37940
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Entry
STNY_R37940 CDS
T07567
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spaq
Stenotrophomonas pavanii
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spaq03032
]
STNY_R37940
03400 DNA repair and recombination proteins [BR:
spaq03400
]
STNY_R37940
Enzymes [BR:
spaq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
STNY_R37940
DNA replication proteins [BR:
spaq03032
]
Prokaryotic type
DNA Topoisomerases
STNY_R37940
DNA repair and recombination proteins [BR:
spaq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
STNY_R37940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
BCX45573
LinkDB
All DBs
Position
4126695..4129178
Genome browser
AA seq
827 aa
AA seq
DB search
MPKHLLIVESPAKAKTINKYLGKDYTVLASYGHVRDLIPKEGAVDPDNGFAMHYDVIDKN
EKHVDAIAKAAKGADDILLATDPDREGEAISWHIAEILKERGLVKDKPMQRVVFTEITPR
AIKEAISQPRAIASDLVDAQQARRALDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIV
EREEEIEAFIAREYWSIAAECAHPSQHFNAKLVKLDGQKFEQFTITDGDTAEAARLRIQQ
AAQGSLHVTDVASKERKRRPAPPFTTSTLQQEASRKLGFTTRKTMQVAQKLYEGVAIGDE
GTVGLISYMRTDSVNLSQDALAEIRDVIARDYGIASLPDQPNTYQTKSKNAQEAHEAVRP
TSALRTPAQVARFLTDDERRLYELIWKRAVACQMIPATLNTVSVDLSAGSEHVFRASGTT
VVVPGFLAVYEEGKDSKSAEDEDEGRKLPAMKPGDRVPLERIQAEQHFTQPPPRYTEAAL
VKALEEYGIGRPSTYASIIQTLLFRKYVEMEGRSFRPSDVGRAVSKFLSSHFTQYVDYDF
TAKLEDELDAVSRGEEEWIPLMARFWEPFKELVEDKKESVDRAEASGARELGTDPKTGKP
VSVRLGRFGPYAAIGSTAEDAEEKPKFASLRPGQSMHTISLEDALELFLMPRALGEDNGE
PVSVGIGRFGPFAKRGSTYASLKKEDDPYTIDLARAVFLIEEKEEIARNRIIKEFEGSDI
QVLNGRFGPYISDGRMNGKIPKDREPASLTLAEVQQLMEETGKPVRKGFGAKKAAAKKAP
AKKAAVKKEAAPKKAAAKKAPAKKAVKKAVKKAAAKKAPAKKAAAKK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagcacctgctcatcgttgaatcgccggccaaggccaagacgatcaacaaatac
ctcggcaaggactacaccgtcctggcctcgtatgggcatgtgcgcgacctgattccgaag
gaaggcgcggtcgacccggacaacgggttcgccatgcactacgacgtgatcgacaagaat
gaaaagcatgtcgatgcgattgccaaggccgccaagggcgccgacgacatcctgctggcg
accgacccggatcgcgagggtgaagcgatcagctggcatatcgccgagatcctgaaggaa
cgcgggctggtcaaggacaagccgatgcagcgcgtggtgttcaccgagatcaccccgcgc
gcgatcaaggaagcgatcagccagccgcgcgcgatcgccagcgacctggtcgatgcccag
caggcgcgccgcgcgctggactacctggtcggtttcaacctgtcgccggtcctgtggcgc
aaggtccagcgcggcctgtccgccggccgcgtgcagagcccggcgctgcgcatgatcgtc
gagcgcgaggaagagatcgaagcgttcatcgcccgcgaatactggtcgatcgccgccgag
tgcgcccacccgtcgcagcacttcaacgccaagctggtcaagctggacgggcagaaattc
gagcagttcaccatcaccgacggcgataccgccgaagccgcccgcctgcgcatccagcag
gccgcgcagggctcgctgcatgtcaccgacgttgccagcaaggagcgcaagcgccgcccg
gcgccgccgttcaccacctccaccctgcagcaggaagcttcgcgcaagctcggtttcacc
acccgcaagaccatgcaggtggcgcagaagctgtacgaaggcgtggcgatcggtgacgaa
ggcaccgtcggcctgatctcgtacatgcgtaccgactcggtgaacctgtcgcaggacgcg
ctggctgaaatccgcgacgtgatcgcccgtgactacggcatcgcctcgctgccggaccag
cccaacacctaccagaccaagtcgaagaacgcccaggaagcgcacgaagcggtgcgcccg
acatcggccctgcgcaccccggcccaggtggcgcgcttcctgaccgacgacgagcgccgc
ctgtacgaactgatctggaagcgcgccgtcgcctgccagatgatcccggccacgctcaat
accgtcagcgtcgacctgtccgctggcagcgagcacgtgttccgtgccagcggcaccacg
gtggtggtgcccggtttcctggccgtgtacgaggaaggcaaggacagcaagagcgccgag
gacgaggacgagggccgcaagctgccggcgatgaagcccggtgaccgcgtgccgctggaa
cgcatccaggccgagcagcatttcacccagccgccgccgcgctacaccgaagcggcgctg
gtgaaggcgctggaagagtacggcatcggccgtccgtcgacctacgcgtcgatcatccag
accctgctgttccgcaagtacgtggaaatggaaggccgcagcttccgtccgtccgacgtc
ggccgcgcggtgtccaagttcctgtccagccacttcacccagtacgtggactacgacttc
accgccaagctcgaagacgaactcgacgccgtctcgcgtggcgaagaagagtggatcccg
ctgatggcccgcttctgggagccgttcaaggagctggtggaagacaagaaggaatcggtg
gaccgcgccgaggccagtggcgcgcgcgagctcggcaccgacccgaagaccggcaagccg
gtcagcgtgcggctgggccgcttcgggccctatgcggccatcggcagcacggcggaggac
gccgaggaaaagcccaagttcgcctcgctgcgcccgggccagtcgatgcacaccatctcg
ctggaagacgcgctggaactgttcctgatgccgcgtgcgctgggcgaggacaatggcgag
ccggtcagcgtcggcatcggccgcttcggtccgttcgccaagcgcggcagcacctacgcc
tcgctgaagaaggaagatgacccgtacaccatcgacctggcccgcgccgtattcctgatc
gaagagaaggaagagatcgcgcgcaaccggatcatcaaggagttcgaaggcagcgacatc
caggtgctgaacggccgcttcggcccgtacatcagcgacggcaggatgaacggcaagatc
cccaaggatcgcgagccggcatcgctgaccctggccgaagtgcagcagctgatggaagaa
accggcaagccggtgcgcaagggcttcggtgcgaagaaggccgctgcgaagaaggcgccg
gccaagaaggcggcggtgaagaaggaagcggcgccgaagaaggccgcggccaagaaagcg
cctgccaagaaggcggtaaagaaggcggtaaagaaggccgccgcgaagaaggccccggcc
aagaaggccgctgcaaagaagtag
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