Stenotrophomonas pavanii: STNY_R42040
Help
Entry
STNY_R42040 CDS
T07567
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
spaq
Stenotrophomonas pavanii
Pathway
spaq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
spaq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
STNY_R42040 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spaq03400
]
STNY_R42040 (recB)
Enzymes [BR:
spaq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
STNY_R42040 (recB)
DNA repair and recombination proteins [BR:
spaq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
STNY_R42040 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BCX45974
LinkDB
All DBs
Position
complement(4580175..4583819)
Genome browser
AA seq
1214 aa
AA seq
DB search
MAGDPYLALPLDGIRLIEASAGTGKTFTLATLFTRLVVEQGLRIGQILAVTFTDAATQEL
RKRIRERLALAARLVDLEPAEGEAPDVRLTREVLQRHLRSGSESPAALKRRLQVAADEID
LAAIFTIHGFCTRVLREHALESGHTFDPPELLASDRELLEELAADLWRAHANDPATLEPL
TWLWPNPDALAADLRALLGAPPLHPLPQAVTLADPQAALQHAAAVLSASVREHGEQFFID
LCDAVDNKWINGVSYKLGWLHPLGRQLLAWAERDDPRELLASDRLPALLPDVLADKTNKK
FADRTPSSPLQAPLARYVALLAERDAWLRDSALAFLHRLREEATQRLQALKRTRRVQTYD
DLIDGVAAALEGPQRLALVRQLRAQYRIALVDEFQDTDDRQWGIFHSVFGDSPEVHELGL
APALFLIGDPKQAIYGFRGGDVHTYLKAKQVAQQAPVLDQNFRSRPAVLRALQALYDNGG
DDAFLEPDIQFEPVRPGGVRTDSDYLRHGDAAVALTLRVLRSGSDKAMSADASRDAATRA
CVAAIHQTLVDARAGKALLRGRPVQPGDMAVLVRSHREATLVQRALAAVGIPAVAAGKQS
LFATSEARDLRALLLALLQPADEGRLRAALATVLLGQRASAIAAMEREGDLQRGFQAQLL
HWRERWQRGGPFAVIADVCAAQGERLLALIDGERRLTNYLQLGELLQEASAQALGMHGLL
DWLQGQMASADQDDEQQLLRLESDARRVQIITLHKSKGLEYPLVYLPFVGIDGGAPNTAS
HCTVHVDGQRQLHWKLGKDDAWEAASSQREREQRAEDARLLYVGLTRAEHALWIAVGDLA
GLRKTRLAPLLGDLQVLRSHPDVHIDDSEVPATLPQLAAEVEGDLPAVRALTRRVPHDWW
VYSFTQLAHADAGAGGDIEAAATELPAPAADEPAGAELPLEPALPEPAVAAEDSTPVDPR
FMGSRFGNVLHEAMENVDFAAWAGWQPGLPAPEGQAEVLRKALHDEGYADADLEEGVAVL
VPLVGHTLTVPLPEGGALHSLGDGERRAEIDFHFAIEPTTVPALLQVLHAHGVSSGRRGF
GQRRRLEGLMTGMIDLTYVRDGRWYVLDYKSNRLPGYSPDLLAIAMRHSEYDLQALIYTV
ALHRWLRFRLGAAYDYERDMGGIRYLFCRGLDGTGNGVHVDRFPFALVDALDALFAGGGQ
AQAELAARARGGSA
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggctggcgatccctacctggccctgccgctggacggcatccgcctgatcgaagccagc
gccggcaccggcaagaccttcaccctggcgacgttgttcacccgcctcgtggtggagcag
ggtctgcgcatcggccagatcctggcggtcaccttcaccgatgccgccacccaggagctg
cgcaagcgcatccgcgagcgcctggcgctggctgcgcgcctggtcgatctggaaccggcc
gagggcgaagcgccggacgtgcggctgacccgcgaggtgctgcagcgccacctgcggagt
ggcagcgagagcccggccgcgctgaagcgccggctgcaggtggcggccgacgagatcgat
ctggccgcgatcttcaccatccacggtttctgcacccgcgtgctgcgtgagcacgcgctg
gaaagcggtcacacgttcgatccaccggagctgctggccagcgaccgcgagctgctggaa
gagcttgcggccgacctgtggcgcgcgcatgccaacgatccggccacgctggagccgctg
acctggctctggcccaacccggacgcgctggcggccgacctgcgcgcgctgctgggcgcg
ccgccgctgcacccgttgccacaggcagtgacgctggccgacccgcaggccgccctgcag
cacgcggcggcagtgctgtccgcaagcgtgcgcgagcacggcgagcagttcttcatcgac
ctctgcgatgcggtcgacaacaagtggatcaacggcgtgtcctacaagctgggctggttg
cacccgctgggccggcagctgctggcctgggccgagcgcgacgatccccgcgaactgctg
gccagcgatcgcctgccggcactgctgccggacgtgctggccgacaagaccaacaagaag
ttcgccgatcggacaccgtcgtcgcccttgcaggcgccgttggcgcgttatgtcgcgctg
ctggccgaacgcgatgcctggctgcgggacagcgcgctggccttcctgcaccgcttgcgc
gaagaagccacgcagcgcctgcaggcgctgaagcgaacgcgccgggttcagacctacgac
gacctgatcgatggcgtggccgcagccctggaaggcccgcagcggctggcgctggtcagg
cagctgcgcgcgcagtaccgcatcgcgctggtcgacgagttccaggataccgacgatcgc
cagtggggcatcttccacagcgtgttcggcgattcgccggaggtgcacgaactcggcctg
gcgccggcgctgttcctgatcggcgacccgaagcaggcgatctacggcttccgcggcggt
gatgtccacacttacctgaaggccaagcaggtcgcgcagcaggcgccggtgctggaccag
aacttccgctcgcgaccggccgtgctgcgtgcgctgcaggcgctgtacgacaacggtggc
gacgacgccttcctcgaacccgacatccagttcgagccggtgcgtcccggcggcgtgcgc
accgattcggactacctgcgccacggcgatgctgcggtggcgctgaccctgcgcgtgctg
cgcagcgggtccgacaaggcgatgagtgccgacgcctcgcgcgatgcagcgacgcgggcg
tgcgtggccgcgatccaccagaccctggtcgatgcgcgggctggcaaggcgctgctgcgc
gggcggccggtacagccgggcgacatggccgtgctggtgcgttcgcaccgtgaggccacc
ctggtgcagcgcgcgctggcggcggtcggcattcctgcggtggcggccggcaagcagagc
ctgttcgccaccagcgaagcgcgcgatctgcgtgcgttgctgctggcactgctgcaaccg
gccgacgagggccgcctacgcgcggcgttggccaccgtgctgctcggccagcgggccagc
gcgatcgcggcgatggagcgcgagggcgacctgcaacgcgggttccaggcgcagctgctg
cactggcgtgagcgctggcagcgcggcggccccttcgcggtgattgccgatgtctgtgcc
gcacagggcgaacgcctgctggcgctgattgacggtgagcgccgcctgaccaactacctg
cagttgggcgaactgttacaggaggcctcggcgcaggcgttgggcatgcatggcctgctg
gactggctgcagggccagatggccagcgccgaccaggatgacgagcagcagctgctgcgc
ctggaatcggatgcacgccgcgtacagatcatcaccctgcacaagagcaagggcctggag
tatccgctggtgtacctgcccttcgtcggcatcgacggcggtgcaccgaacaccgcgtcg
cactgcaccgtgcacgtcgatggccagcgccagctgcactggaagctgggcaaggacgac
gcctgggaagcagccagcagccagcgcgagcgcgagcagcgcgccgaggatgcgcgcctg
ctgtacgtcggcctgacccgcgccgagcacgcgctgtggatcgccgtgggcgatctggcc
gggctgcgaaagacccggctggcaccgctgctgggcgacctgcaggtgctgcgctcgcat
cccgacgtgcacatcgacgacagcgaggtcccggccacgctgccgcagctggcggctgaa
gtggaaggcgaccttccggcagtacgggcactgacccggcgcgtgccgcacgactggtgg
gtatacagcttcacccagctggcgcatgccgatgccggcgctggcggtgatatcgaagcg
gcggccaccgagctgccggcgcccgccgccgacgaacccgcgggcgcggaactgccgctg
gaaccggcactgccggagccggccgtcgctgccgaggacagcacgcctgtggacccgcgc
ttcatgggcagccgcttcggcaacgtgctgcatgaggcaatggagaacgttgacttcgcc
gcatgggccggctggcaacccggcctgccggcgccggaaggccaggccgaggtgctgcgc
aaggcgctgcacgacgagggctacgccgatgccgatcttgaggagggcgtggccgtgctg
gtgcccctggtcggccacacgctcaccgtgccgctgcccgaaggcggagccctgcatagc
cttggcgacggcgagcgccgtgcggagatcgacttccatttcgccatcgaacccaccacg
gtgccggcgctgctgcaggtgctgcatgcacacggcgtttccagtggccggcgcggcttc
ggccaacgccgccgcctggaagggctgatgaccggcatgatcgacctgacctacgtgcgc
gatggtcgctggtatgtgctcgactacaagtccaatcgcctgcccggctacagtccggac
ctgctggccatcgccatgcgccacagcgagtacgacctgcaggcgctgatctataccgtg
gcgctgcaccgctggctgcgcttccggctgggcgcggcctacgactacgagcgcgacatg
ggcggcatccgttacctgttctgccgtggcctggacggcaccggcaacggcgtgcacgtg
gatcgcttcccgttcgcgctggtggatgcgctggatgcgctgttcgccggtggcgggcag
gcccaggccgaactggccgcacgtgcgcgggggggcagcgcatga
DBGET
integrated database retrieval system
