Saprolegnia parasitica: SPRG_01013
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Entry
SPRG_01013 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
spar
Saprolegnia parasitica
Pathway
spar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPRG_01013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spar03041
]
SPRG_01013
Enzymes [BR:
spar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPRG_01013
Spliceosome [BR:
spar03041
]
Complex C
Other components
Step II factors
SPRG_01013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
Flavi_DEAD
PhoH
DUF7328
Helicase_RecD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
24123626
NCBI-ProteinID:
XP_012194605
UniProt:
A0A067D8G3
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MAARGRSREKRRRSPSPDGFGRVKRDASSDRPRRRSPPREDSSIQDFQAQRATLPVGKYK
EALLDAIAANQIIVCIGETGSGKTTQLPQFLLEAGYGATKRIAITQPRRVATTAVAKRVG
EELAASGLSPKAVGYTIRFDDQCTSETKIKFMTDGILVRECLQDPLLQQYSIIMLDEAHE
RSIHTDILFGLLKSILSARSDLKLIVTSATLDDERFAAFFNGCPVFRVPGRSFPVDIYHS
KQHQIMGKTGPVSTYITAAVDATLQIHSNEPAGHILLFLTGQKEIDDACKELTKRLQLLR
DASPDVARFHVLPLYGALSSAKQRRIFEPSRDRKIIVCTNIAETSLTVDGVKYVVDAGFT
KQKVYNPARGLESLVVVPVSQVSAQQRAGRAGRTSAGKCYRLYSKQSYESMLPETVPEIQ
RSNLANTILYLKVLGIADVVGFDYLDPPAEDAILDALHQLYILGALDDDGSVTEIGKDMA
QFPLEPRLARVLLEGIQLDCANEAMTIVAMLSVENVFMFQTNRHRDDPMAASRRRAMDLL
ETTIHPRGDHLTLLQLFQAWEHLPPYEQEAWCHERHLHCRAFRTAASVRSQLHDLVDKVR
RRQQPPTTTTPTLDRVRQAVTAGFFMHGARKCIMHAIYRCLHHGSTEDTTAELVHIHPSS
SLSERAPPEFCIYHELVHTSRGYMRHVLEVDAAWLDMYKPPKQLKPSECYRLTQREPPAA
LVAAETSAAAAVDVGDAPRFVKVELVKVTDDAVSAARARYLARKQQQHRK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcgaggtcgatcccgtgagaagcggcgccggtcgccgtcgcccgatggcttt
ggccgcgtgaagcgcgatgcgtcatccgaccgcccgcgccgtcggtcgccgccgcgggag
gacagtagcatccaagacttccaagcgcaacgcgctacgctgcccgtgggcaagtacaag
gaggcattgctcgacgcaatcgctgccaaccagattatcgtgtgcattggcgagacgggc
tcgggcaagacgacgcagctgccgcagttcctcttggaagcggggtacggcgccacgaag
cgcattgccattacccaacctcggcgcgtcgcaacgacggccgtcgccaagcgcgtcggc
gaagagctcgccgcctccggcctctcgcccaaggcggtggggtataccattcggtttgac
gaccaatgcacatccgagaccaagatcaagtttatgaccgatggcatcctcgtgcgcgag
tgtcttcaggacccgctcttgcagcagtactcgatcatcatgcttgacgaggcgcatgag
cgaagcatccacacggacatcctctttggcctcctcaagtcgatcctctcggcccgcagc
gacctcaagctcattgtcacctcggcgaccttggacgatgagcgcttcgcagccttcttc
aacggctgccccgtctttcgcgtgcccgggcggtcgttcccggtggacatttaccactcg
aaacagcaccaaatcatgggcaaaaccgggcctgtctcgacgtacatcacggcggccgtc
gatgcgacgctgcagatccacagcaacgagccagcggggcacatcctcctcttcctcacg
ggccaaaaggagattgacgatgcgtgcaaggagctcacaaagcggctccaactgctccgc
gacgcatcgcccgacgtggctcgcttccacgtgctgccgctctacggcgccttgtcgagt
gccaagcagcgccgcatctttgagccgtcgcgcgaccgcaagatcattgtgtgcaccaac
atcgccgagacgtcgctcacggtcgacggcgtcaagtacgtcgtcgacgcgggctttacc
aagcaaaaggtctacaacccggcacgtggcctcgagtccctcgttgtcgtgcccgtctcg
caagtgtctgcccagcaacgggccggccgtgcaggccgcaccagcgcgggcaaatgctac
cgcctctactccaagcagtcgtacgagtcgatgctgcccgagaccgtgcccgagatccag
cgctccaacttggccaacacgatcttgtaccttaaagtgctcggcatcgccgacgtggtt
ggcttcgactatttggatccgccggccgaagacgcgatcctcgacgccctccaccagctc
tacatcctaggcgcgttggacgacgacggcagcgtcacggagattggcaaggacatggcg
caatttccgctcgagccgcgcttggcccgcgtgctcctcgaaggcatccagctcgactgc
gcgaacgaagcgatgacgatcgtcgccatgctctccgtcgagaacgtctttatgtttcaa
accaaccgacaccgcgacgaccccatggcggcgtcgcgtcgccgcgccatggacctcctc
gagaccacgatccatccccgaggcgaccacctaaccctcctccagctcttccaagcgtgg
gagcacctcccgccgtacgagcaagaagcgtggtgccatgagcgccatttgcactgccgc
gcgttccgcaccgccgcgtcggtccggtcgcagctccacgacttggtcgacaaggtgcgt
cgacgccagcaaccgccgacaacgacgacgccgacgctcgaccgcgtccgacaagccgtg
accgcgggcttcttcatgcatggggcccgcaagtgcatcatgcacgcgatctaccgctgc
ctgcaccatgggtcgaccgaggacacgaccgcagagctcgtgcatattcacccgtcgtcg
tcgctgagcgagcgagcgccgcccgagttttgcatctaccacgagctcgtgcacaccagc
cgcggctacatgcgccacgtgctcgaggtcgacgcggcgtggctcgacatgtacaaaccg
cccaagcagctcaagccctccgagtgctaccgcctcacgcagcgggagccaccggccgcg
ctcgtcgccgccgagacgtccgccgctgccgccgtcgacgtcggcgacgcgccgcgcttc
gtcaaggtcgagctcgtcaaggtcacggacgacgccgtctcggcggcacgcgcgcggtac
ctcgcccgaaagcagcagcagcatcgcaagtag
DBGET
integrated database retrieval system
