Saprolegnia parasitica: SPRG_02969
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Entry
SPRG_02969 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
spar
Saprolegnia parasitica
Pathway
spar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPRG_02969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spar03041
]
SPRG_02969
Enzymes [BR:
spar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPRG_02969
Spliceosome [BR:
spar03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
SPRG_02969
Complex B
SPRG_02969
Complex C
U2 SnRNP specific factors
SPRG_02969
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SWI2_SNF2
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
24125503
NCBI-ProteinID:
XP_012196941
UniProt:
A0A067D0A7
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MSDDEIDPLDAFMAGIEAQVEVEKAERRPRIERCTFEEEEKDATTAKAMPSAAQVFEEDV
EDRMSKNQDMQEIEALDHSKIAYEPFRKAFFKPTIAMTPEEVQAARRELDIRVELPVGCD
DVGPIRSFMHAGFSRQILALLMKHGLEAPTPIQSQAFPLALSGRDLIAIAQTGSGKTLSF
VLPMMVHIMDQRYLEKDEGPIAIVLSPTRELAHQIYVEAKKFSMDANCAAIYGGAGNKWD
QIQSLKKGAEIVVATPGRLLEHLRKRVIKSLSRVTFVVLDEADRMFEMGFEAQLRSILGQ
IRPDRQTLLFSATFRKRIEALARDVLTKPAKIIVGTVGQANDEIKQVAVVLPNPAAKWNW
LIAKLPELVSQGKLLVFVSSKAGVDEVSTNLNDHPIKLTCVSLHGDKSQYDRSDALHRFK
TSACPILIATDVAARGLDIKDVRNVVNYDAAKSIDTHVHRIGRTGRMGVDGVAPGTAYTL
LTPNDVEFAGHLVNNMDGSRQSVVGSDLLHLAARSPHFHRRHAPRASHPDDDDDDEIDAV
EREYAMAMTQPKSKQEQRQGLGFGFQSKKKGGPPAKRGMGLGFVAASSASKASAAAPMCI
EQTFGFVRGSAPPAHHPPPAYHPPPAFSPPPAYSPPPAYSPPPESRPAAVVGSSSSSSGS
GLAHVPERKRSRWGMREADAVVEPAPRVKKSRWGPAT
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgacgagatcgacccgctggacgcgttcatggccggaatcgaggcccaggtc
gaggtcgagaaggcagagcgccggcctcggatcgagcgatgtaccttcgaggaggaagag
aaggacgcgacgacggccaaggccatgcccagcgctgcccaagtgtttgaggaagacgtc
gaggaccgcatgagcaagaaccaagacatgcaagagatcgaagcgctcgaccactcgaag
atcgcgtatgagccattccggaaagcgttcttcaagccgaccattgcaatgacgccagaa
gaggtgcaagcggcgcggcgcgagctcgacattcgggtcgagctgccggtcgggtgcgac
gacgtggggccgatccgatcgttcatgcacgccggctttagccgccagatcctcgcgttg
ctcatgaagcatggtctcgaagcgccgacgccgattcagtcccaagcgttcccgctggcg
ctttcggggcgcgacctcatagcgatcgcgcagaccgggtccgggaagacgctctcgttc
gtgctgccaatgatggtgcacatcatggaccagcggtatctcgagaaggacgagggaccg
atagcgattgtgctctcgccgacgcgggagctcgcccatcagatctacgttgaagccaag
aagtttagcatggacgccaactgcgcagccatttacggcggtgcgggcaacaagtgggac
cagatccagtcactcaagaagggcgcggagatcgtcgtcgcgacgcctggtcgcctcctc
gagcatctccggaagcgcgtcatcaagtccctttctcgggtcacctttgtcgtccttgac
gaagccgaccgcatgtttgagatgggcttcgaagcacagctccggtccatcttggggcag
attcgacccgatcgacagacgctgctcttctcggcgacctttcgcaagcgcatagaggct
ttggcgcgcgacgtgctgaccaagcccgccaagatcattgtggggaccgtcgggcaggcc
aacgatgaaatcaagcaagtcgcggttgtgctcccaaaccccgcagccaagtggaattgg
ctcattgcaaagcttccggagctcgtatcgcaaggaaagctcctcgtttttgtcagtagc
aaggctggcgtggacgaagtctcgacgaacctcaacgaccacccgatcaaactcacttgc
gtgtcgctccacggtgacaagtcgcagtacgaccgatccgacgcgctccatcgcttcaaa
acgagcgcgtgtccgattctgattgcaacggacgtggcggcgcgcggtctcgacatcaag
gacgttcgcaacgttgtcaactacgacgcagccaagtcgatcgacacacacgtgcaccgc
atcgggcgcacgggccgcatgggcgtcgacggcgttgcgccaggcaccgcgtatacgctc
ttgacaccgaacgacgtcgagtttgccggccacctcgtcaacaacatggacggctcgcgc
caaagcgtcgtcggctcggacctcctccaccttgcggcgcggtctccccactttcatcgc
cgccacgcaccgcgcgcttcccatccggacgatgacgacgacgacgagattgatgccgtc
gagcgcgagtatgcgatggccatgacgcaaccaaagtccaagcaggagcagcgccagggc
ctcggctttggttttcagagcaaaaagaagggcggaccacccgcaaagcgaggcatgggc
ctcggattcgtggcggcgtccagtgccagcaaagccagcgcggccgctccgatgtgcatc
gaacagacctttggctttgtacggggctcagccccgccggcgcaccacccacctccagcg
taccaccctccaccagcgttcagcccacctccagcgtacagccctccaccagcgtacagc
ccgccgcccgagtcccgtcccgctgctgtcgtaggtagcagtagtagcagtagcggtagt
ggtctcgcccatgtgcccgagcggaaacgcagtcggtggggtatgcgcgaagccgacgcg
gtcgtcgagcccgcgccccgggtcaagaagagtcgatgggggcccgcgacgtaa
DBGET
integrated database retrieval system
