Saprolegnia parasitica: SPRG_04163
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Entry
SPRG_04163 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12878
THO complex subunit 1
Organism
spar
Saprolegnia parasitica
Pathway
spar03013
Nucleocytoplasmic transport
spar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPRG_04163
09122 Translation
03013 Nucleocytoplasmic transport
SPRG_04163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spar03019
]
SPRG_04163
03041 Spliceosome [BR:
spar03041
]
SPRG_04163
Messenger RNA biogenesis [BR:
spar03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
SPRG_04163
Spliceosome [BR:
spar03041
]
Complex C
Other components
EJC/TREX
SPRG_04163
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SPRG_04163
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
24126629
NCBI-ProteinID:
XP_012198159
UniProt:
A0A067CNZ3
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MRRTACELATFAQGEIAYFHRKSDATARLGELAKRVTSEAADDHIATDELEEKVHTILEL
AIQRVAEKMAWDLHRKRDATLESVGIPALLDLCTDGATRGYLMLNAPYKILEDLVDCQTI
VVCEQLWGLLESRRSRLTTTDFIQAGKNSKASLCLLRMCNALLRRLSKTHNTVFCGRILM
FLAYTFSLSERSGVNLLGRFNTSNVTKYQTEAEFEASMEQVRNAPLEEATKTSYALYKVF
WDIQRFLSNPTIVADSDAEWTTLFQQLDDVLSAFESNPFSDEDIDRARELQSQSEDDEKD
HFFQTKYLTNSRLFHLQLRDPVLRECMLTQLLILFGHLERSKVPAAASKVRRTSLEDCFD
RVFRLLEKNVNGQQYSAMLTEVLERERNYVAWKLEKCPKFERRPDPADASDGDIPPPKRP
KVSRAPTIADGIFKEDDLLQSVLGADRATCKPLKEFTDQFEMAWDPENGIERAYWPDNDK
MICWKTMRSCMRTQIVHLDKAVDGVSAIVKSVLGKPAETPVEIEASPLPSPDVDDETKKE
DDPMGDEAPVDAAE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgcgacggacggcctgcgagctggcaacctttgcgcagggtgagatcgcctacttccat
cgcaagagcgatgcgaccgcgcgcctcggtgagctcgccaagcgcgtgacgagcgaagcg
gccgacgaccacatcgctacggacgagctcgaagagaaggtgcacacgatcctcgagctg
gcgattcagcgcgtggccgaaaagatggcatgggacctccaccgcaagcgcgacgcgacg
ctcgagtcggtcgggatcccggcgctgctcgatctctgcacggatggtgccacacgcggc
tacctcatgctcaacgcgccctacaagatcctcgaagacctcgtggactgccagaccatc
gttgtctgcgagcagctctggggtcttctcgagagccgccgcagccgcctcacgaccacc
gactttatccaagcgggcaagaacagcaaggcgtcgctctgcttgctgcgcatgtgcaat
gcgctcctccgacgactctccaagacgcacaacacggtcttctgcggccgcatcctcatg
ttcctcgcctacactttctcgctctcggagcgttcgggcgtcaacctcctcggccgcttt
aacacgagcaacgtcaccaagtaccagaccgaagcggaatttgaagcgtccatggaacag
gtccgcaacgcgccgctggaagaagcgaccaaaacaagctacgcgctctacaaggtgttt
tgggacatccagcgcttcctgagcaacccgacgatcgttgccgacagcgatgccgagtgg
acgacgctctttcaacagctcgacgacgtgctctcggcgttcgagtcgaacccgttctcg
gacgaagacattgaccgtgcgcgggagctgcaatcccagtccgaggacgatgagaaggat
cactttttccagaccaaatacttgaccaacagccgactctttcacttgcagctgcgcgat
cccgtccttcgcgagtgcatgctcacgcagttgttgatcctctttgggcatctcgaacgg
tccaaagtccccgctgcagccagcaaggtacgtcgtacgtcgctggaagattgctttgac
cgtgttttccgcctcttggagaagaacgtcaacggccaacagtacagcgcgatgctgacg
gaggtgctcgagcgcgagcgcaactacgttgcatggaagctcgaaaagtgccccaagttt
gagcggcgtcccgaccctgcggatgcgagtgacggtgacatcccgccaccaaagcgcccg
aaggtgagccgtgctccgacgattgcggacgggatcttcaaggaagacgatctgctgcag
agtgtcctcggggctgaccgcgcaacgtgcaaaccgctcaaggagtttacggaccagttt
gagatggcatgggaccccgaaaatggcatcgagcgagcgtactggcccgacaacgacaag
atgatttgctggaagaccatgcgcagctgcatgcgaacgcagatcgtgcacttggacaag
gccgtcgacggtgtctcggccatcgtcaagagtgttttgggcaagccggcagagacgccg
gttgagatcgaagcgtcgccgctgccgtcgcctgatgttgacgacgagaccaagaaggaa
gacgatccgatgggcgatgaggcccccgtcgacgccgcagaataa
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