KEGG   Saprolegnia parasitica: SPRG_04163
Entry
SPRG_04163        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K12878  THO complex subunit 1
Organism
spar  Saprolegnia parasitica
Pathway
spar03013  Nucleocytoplasmic transport
spar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPRG_04163
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPRG_04163
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_04163
   03041 Spliceosome [BR:spar03041]
    SPRG_04163
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     SPRG_04163
Spliceosome [BR:spar03041]
 Complex C
  Other components
   EJC/TREX
    SPRG_04163
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SPRG_04163
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 24126629
NCBI-ProteinID: XP_012198159
UniProt: A0A067CNZ3
LinkDB
Position
Unknown
AA seq 554 aa
MRRTACELATFAQGEIAYFHRKSDATARLGELAKRVTSEAADDHIATDELEEKVHTILEL
AIQRVAEKMAWDLHRKRDATLESVGIPALLDLCTDGATRGYLMLNAPYKILEDLVDCQTI
VVCEQLWGLLESRRSRLTTTDFIQAGKNSKASLCLLRMCNALLRRLSKTHNTVFCGRILM
FLAYTFSLSERSGVNLLGRFNTSNVTKYQTEAEFEASMEQVRNAPLEEATKTSYALYKVF
WDIQRFLSNPTIVADSDAEWTTLFQQLDDVLSAFESNPFSDEDIDRARELQSQSEDDEKD
HFFQTKYLTNSRLFHLQLRDPVLRECMLTQLLILFGHLERSKVPAAASKVRRTSLEDCFD
RVFRLLEKNVNGQQYSAMLTEVLERERNYVAWKLEKCPKFERRPDPADASDGDIPPPKRP
KVSRAPTIADGIFKEDDLLQSVLGADRATCKPLKEFTDQFEMAWDPENGIERAYWPDNDK
MICWKTMRSCMRTQIVHLDKAVDGVSAIVKSVLGKPAETPVEIEASPLPSPDVDDETKKE
DDPMGDEAPVDAAE
NT seq 1665 nt   +upstreamnt  +downstreamnt
atgcgacggacggcctgcgagctggcaacctttgcgcagggtgagatcgcctacttccat
cgcaagagcgatgcgaccgcgcgcctcggtgagctcgccaagcgcgtgacgagcgaagcg
gccgacgaccacatcgctacggacgagctcgaagagaaggtgcacacgatcctcgagctg
gcgattcagcgcgtggccgaaaagatggcatgggacctccaccgcaagcgcgacgcgacg
ctcgagtcggtcgggatcccggcgctgctcgatctctgcacggatggtgccacacgcggc
tacctcatgctcaacgcgccctacaagatcctcgaagacctcgtggactgccagaccatc
gttgtctgcgagcagctctggggtcttctcgagagccgccgcagccgcctcacgaccacc
gactttatccaagcgggcaagaacagcaaggcgtcgctctgcttgctgcgcatgtgcaat
gcgctcctccgacgactctccaagacgcacaacacggtcttctgcggccgcatcctcatg
ttcctcgcctacactttctcgctctcggagcgttcgggcgtcaacctcctcggccgcttt
aacacgagcaacgtcaccaagtaccagaccgaagcggaatttgaagcgtccatggaacag
gtccgcaacgcgccgctggaagaagcgaccaaaacaagctacgcgctctacaaggtgttt
tgggacatccagcgcttcctgagcaacccgacgatcgttgccgacagcgatgccgagtgg
acgacgctctttcaacagctcgacgacgtgctctcggcgttcgagtcgaacccgttctcg
gacgaagacattgaccgtgcgcgggagctgcaatcccagtccgaggacgatgagaaggat
cactttttccagaccaaatacttgaccaacagccgactctttcacttgcagctgcgcgat
cccgtccttcgcgagtgcatgctcacgcagttgttgatcctctttgggcatctcgaacgg
tccaaagtccccgctgcagccagcaaggtacgtcgtacgtcgctggaagattgctttgac
cgtgttttccgcctcttggagaagaacgtcaacggccaacagtacagcgcgatgctgacg
gaggtgctcgagcgcgagcgcaactacgttgcatggaagctcgaaaagtgccccaagttt
gagcggcgtcccgaccctgcggatgcgagtgacggtgacatcccgccaccaaagcgcccg
aaggtgagccgtgctccgacgattgcggacgggatcttcaaggaagacgatctgctgcag
agtgtcctcggggctgaccgcgcaacgtgcaaaccgctcaaggagtttacggaccagttt
gagatggcatgggaccccgaaaatggcatcgagcgagcgtactggcccgacaacgacaag
atgatttgctggaagaccatgcgcagctgcatgcgaacgcagatcgtgcacttggacaag
gccgtcgacggtgtctcggccatcgtcaagagtgttttgggcaagccggcagagacgccg
gttgagatcgaagcgtcgccgctgccgtcgcctgatgttgacgacgagaccaagaaggaa
gacgatccgatgggcgatgaggcccccgtcgacgccgcagaataa

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