KEGG   Saprolegnia parasitica: SPRG_04950
Entry
SPRG_04950        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K06100  symplekin
Organism
spar  Saprolegnia parasitica
Pathway
spar03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPRG_04950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spar03021]
    SPRG_04950
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_04950
Transcription machinery [BR:spar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SPRG_04950
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     SPRG_04950
    U7-dependent histone pre-mRNA processing factors
     SPRG_04950
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N
Other DBs
NCBI-GeneID: 24127365
NCBI-ProteinID: XP_012199478
UniProt: A0A067CHA2
LinkDB
Position
Unknown
AA seq 1186 aa
MSRVLDLVNEAQLAVDANEKVTVLHRLKEVVLERSPPPGLQEYAAAMDGLAAMASERNVN
VAKTICQFIEDAMDPARNASIKSPPVLSKTRFTLFQATAAVLTINAGPSAVRKALKLLDK
YVPATIFFVWTQPLDALDESVWLQMLDTIQILQHIIDQLQDAESILLAARVLETVALHFS
YATDSVHRDPARSNVQPDAVHLAMIPASHRFVRPEPLADLGQHIVHALCNRLSSAPRHPM
LSFGRREFVSFIHSISLIACLRTDFAPIVVPCLVNFPSIMDTVDARVQDTLLHAIKANLI
KLLRLPLPSDLQEDMTNTLIAMDASKRALEALSKSKETRRMYVAAPTDASLKNLRRDDAK
RRLPFDASSLKSKRAKVEDVKPTAITAESIVNLPNDHVVRFVLGNMGNLPAVAPLTASGV
KLELLHTPSALKDRITSMLSRLATPSSVLALAMNAKKTAAARRDPRLRRDNVKTEAPSLL
PAFDDNSLESVTNIVCANAQTLVEPIISVTKDEVTREYNAIRVNIKPVSDDWCRQMAHLS
ISRMLENEYGILTSGHEGLREALICRLATSRWLLEENARDAKSIHKLIVDFVGEALHKRH
MILVSLAYHEYTRSLYDSTQSVDHGRYPRLLQLVCAMLSTRIDPSVAADKKLFYAILSHF
PGLTKDVLAMLAKQLGDAADNQRLIMGVSALRNYITDRAAGQEACLHILLHFATHVEEAT
RNLTIRCLANQIYPLPKMHEIIEAHAMTLMTSLCEAPADDAAAIEDDQDEAKIKMFDDVE
EALTTRVPLSPRRKYYLDRIVQPTVTVDDTLLAFAKELQKEHDFSVAPESEAHVLQRMEL
FLALCAKKPELFAHFVSTYARASPPVQHVLVTSVDKLIKHLKQREGDAVVLAQLQPFPAT
ALDFVGHVVRLLVSLSRDPSTLVEPLLALYNAHATYPDAVGLLIPIVSEMTTDVFLPLLP
RFFQLPPARLTETMTKLLAPIPLKVDPTALLLALHHVPDEAERQKPVLKAIGMCLEHPAV
FTPDVFQTVITTLVQESPIPKFTMRTMIQAVQLYSKLRKPMASSLEALVVRELWTMDETL
WKGFMKCAVVVQPHSFPVLLQLPLEQGQSILEMDEGKDLLEPFKAFCTKDDVVLTAEWRT
YLGLDDVTLDDEVVKVDEEEAVKAEPQSENQDNMVDVKMEDDQPDA
NT seq 3561 nt   +upstreamnt  +downstreamnt
atgtcccgcgtgctcgacctggtcaatgaagcgcagctcgcggtggatgcgaatgagaag
gtgaccgtgctgcaccggctgaaggaggtcgtactcgagcgcagcccgccaccgggactg
caagagtacgcggctgcgatggacggccttgccgccatggccagcgagcgcaatgtgaac
gtcgccaagaccatctgccagttcattgaagatgccatggacccagcacggaacgcgtcg
atcaagtcgccgcccgtgctctccaagacgcgcttcacgctcttccaggcgacggctgcg
gtcctcaccatcaacgccggtccctcggccgtgcgcaaggcgctcaagctcctcgacaag
tacgtgcccgcgacgatcttctttgtctggacacagccgctcgacgcgctcgacgagtct
gtgtggctccaaatgctcgatacgatccagatcctgcaacacatcatcgaccagcttcaa
gacgccgagtcgatcctgcttgctgcgcgcgtgctcgagaccgtcgcgctccacttttcg
tacgccaccgacagcgtccatcgcgacccggcgaggtccaacgtgcagccggacgcagtg
cacctcgcgatgatcccggcgtcgcaccgctttgtgcgccccgagccgctcgccgacctc
ggccagcacattgtacacgcgctctgcaatcgcctctcgtccgcgccccgccacccgatg
ctttcgtttggccggcgcgagtttgtgagtttcatccactcgattagtctcatcgcgtgt
ctgcgcacggactttgcgccgatcgtcgtaccctgcctcgtcaacttcccgtcgatcatg
gacacggtcgacgcgcgtgtccaagacacgcttctgcatgcgatcaaggccaacttgatc
aagctgctccgactgccgctcccaagtgacctccaggaagacatgacaaacacgctcatc
gcgatggacgcctccaagcgggcgctcgaagcccttagcaagtccaaggagacgcgacgc
atgtacgtggcggcgccaaccgatgcgtcgctcaagaacctccggcgcgacgacgccaag
cggcgccttccgttcgacgcgagcagcctcaagagcaagcgcgccaaggtcgaggacgtc
aagccgacggccatcacggccgagtcgatcgtgaacctcccgaacgaccacgtcgtgcgc
ttcgtcctcggcaacatgggcaacttgccggcggtggcgccgctgaccgcgtcgggcgtc
aagctcgagctactccacacgccgagcgcgctcaaagatcgcatcacgtccatgttgtcg
cggctcgcgacgccgtcgtcggtgctggcgctggccatgaacgctaagaagaccgccgcc
gcgcgccgagacccgcgcctgcggcgcgacaacgtcaagacggaggcgccgagcctcttg
ccggcgttcgacgacaacagcctcgagtcggtgaccaacatcgtgtgtgcgaacgcgcag
acgctcgtcgagcccatcatttcggtcacgaaagacgaggtcacgcgcgaatacaacgcg
atccgcgtcaacatcaagcccgtgagcgacgactggtgccggcaaatggcgcatctgagc
atctcgcgcatgctcgagaacgagtacggcatcctcacgagcggccacgaagggctgcgc
gaggccttgatctgccgcctcgcgaccagccgatggctcttggaagagaacgcgcgcgat
gccaagtcgatccacaagctcattgtcgactttgtcggcgaggcgctgcacaagcggcac
atgatcctcgtctcgctcgcgtaccacgagtacacgcggtcgctctacgacagcacgcaa
agcgtcgaccacggccggtacccgcgcttgctccagctcgtctgcgcgatgctctcgacg
cgcatcgacccaagcgtcgcggccgacaagaagctcttttatgccatcttgtcgcacttt
ccgggtctcacgaaagatgtgctcgcgatgctggccaagcagctcggcgacgcagctgac
aaccagcgcctcatcatgggggtcagcgcgctccgcaactacattacggaccgcgcggcg
gggcaggaagcgtgcttgcacattcttttgcattttgcgacccacgtcgaagaggcgacg
cgcaacctcacgatccggtgtcttgccaaccaaatctacccgctgcccaagatgcacgag
atcattgaggcacacgcaatgacgctcatgacgtccctctgcgaagcacccgcggacgac
gcagccgcgattgaggacgaccaagacgaagccaagatcaagatgttcgacgacgtagaa
gaggcgctcacgacccgcgtcccgctttcaccgcgccgcaagtactacctcgaccgcatc
gtgcagccgactgtcacggtggacgatacgcttctggcgtttgccaaggaactgcagaag
gagcacgacttcagcgtcgcgcccgagagtgaagcccacgttctccagcgcatggagctc
ttccttgcgctctgcgccaagaagcccgagctctttgcgcatttcgtgtcgacgtatgcg
cgcgcgtccccgcccgtgcaacacgtgctcgttacgtctgtcgataagctcatcaagcac
ctcaagcagcgtgaaggcgacgcggtcgttctcgcccagctgcagccgttcccggcaacc
gcactcgactttgtgggccacgtggtgcgactgctggtgtcgctctcgcgcgacccgtcg
acgctcgtggagccacttcttgcgctctacaacgcccatgcgacgtaccccgacgcggtc
ggcctcttgattccgatcgtgtcggagatgacgaccgacgtcttcttgccgctgctgccg
cgcttcttccagctgccacccgcgcggctcacggaaaccatgaccaagctgcttgcgccg
atcccgctcaaggtcgatccgacggcgctcctcctcgcgctgcaccacgtgcccgacgaa
gccgagcgccaaaagcccgtgctgaaggcgattggcatgtgtctcgagcaccctgctgtg
tttacgcccgacgtgttccaaaccgtgattacgacgcttgtgcaagagtcgccgattccg
aaattcacgatgcgcacgatgatccaagccgtccaactctactccaagctgcgcaagccg
atggcgtcgagcctcgaagcgctcgtcgtccgcgagctctggacgatggacgagacgctc
tggaagggattcatgaagtgcgctgtcgtcgtccagccgcactcgttcccggtgctgctg
cagctgcctctggagcaaggccaaagcatcctcgaaatggacgaaggcaaggacctcctc
gagccgttcaaagccttttgcacgaaagacgacgtggtgctgaccgccgagtggcggaca
tacttgggtctcgacgacgtcacgctcgacgacgaggtggtcaaggtcgacgaagaagag
gcggtcaaggccgaaccgcaatccgagaaccaagacaacatggttgatgtcaagatggag
gacgaccaacccgacgcttaa

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