Saprolegnia parasitica: SPRG_05301
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Entry
SPRG_05301 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
spar
Saprolegnia parasitica
Pathway
spar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPRG_05301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spar03019
]
SPRG_05301
Messenger RNA biogenesis [BR:
spar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPRG_05301
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SPRG_05301
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
Keratin_2_head
Motif
Other DBs
NCBI-GeneID:
24127701
NCBI-ProteinID:
XP_012199289
UniProt:
A0A067CH96
LinkDB
All DBs
Position
Unknown
AA seq
474 aa
AA seq
DB search
MSVLDPSKDKLAYFKDNIQTAEDQEEFDASQYYYNRQDGFFKQSPGMGGTPRERKRCKLS
CCRAIGDPSQAGLQMGMQPGVYPGYSSGAAQPQMASFLAATSTGIGMGSMGMAGMGMGGM
AGMGMGSAVRSVPPTTPTASGLMDNYLASRIAEPATTPITMATKVRTFEKSPDMSEFPAL
TARSSSVDENSPAFRQNSEFVIQKEDFPALSSFGAEGRPTEKAANQGMSSSNDAMLQRTS
QPSTSSTSSSIGSRSGTHVNATFANVGGFQSANNLAVNSFPPLHANDAKPHPSSRPSSSS
SEETSRFGLLGMLHVIRATDPERNVAQGCDLTSLGLNLNSSEPLHPTFASPWSDTPCTKE
PQYTLPLCYYNQPPVLKTSHLSKFQLETLFYIFYSMPKDVVQAYAAQELYLREWRYHMDL
KLWFKRQQSESAALQYIYFDINTWERRLFGGNPSAVSAGFMTDDDVRVKFTPTP
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcctggacccgtcgaaggacaagctggcatacttcaaggacaacatacagacg
gcagaggaccaggaagagtttgatgcgagccaatactactacaaccggcaggacgggttc
ttcaagcagagcccaggcatgggaggtacgcctcgggaacgcaagcggtgcaagctcagt
tgttgtcgtgcaataggtgacccgagccaagcgggcttgcagatgggcatgcagccgggc
gtctaccctggctacagcagcggcgctgcccagccgcaaatggcgtcgttcctagcggcg
acgtcaaccggcatcggtatgggctccatggggatggccggtatgggcatgggcggcatg
gctggcatgggcatgggcagcgccgtaagaagcgtaccaccgacgacgccgacagcgtcg
ggtttgatggacaactacctggcgtcgcgcatcgccgagccggctacgactcccatcacc
atggccaccaaagtgcggacattcgaaaagtcacccgacatgtcggagtttccggcattg
actgcgcggagtagctcggtcgatgaaaactcgcctgcgtttcggcaaaactctgagttt
gtgattcaaaaagaggactttccggcgctctcgtcgtttggcgccgagggtcgaccgacg
gagaaggctgcgaaccaaggcatgtcatcgtcgaacgacgcgatgctgcagcgcacgagc
cagccgtcgacaagcagcacgtcatcgtccattgggtcccgctcgggcacgcacgtgaac
gcgacctttgccaacgtcggcggtttccagtcggccaacaacctcgcggtcaactcgttc
ccgccgctgcacgcaaacgacgccaagccgcacccgtcgtcgcgaccgtcgtcgtcgtcg
tcggaagaaacgtcgcgctttggcctcctcggcatgctgcacgtcatacgcgcgaccgac
ccggaacgcaacgtggcgcagggctgcgacctcacgtcgctgggcctcaacctcaactcg
tccgaaccgctgcacccgacgtttgcttcgccgtggtcagacacgccgtgtacaaaggag
ccgcagtacacgctgccactttgctattacaaccagccgcccgtgctcaagacgtcgcac
ctctccaagtttcagcttgagacgctcttttacatcttttactcgatgcccaaggacgtc
gtgcaagcgtacgcagcccaggagctctacctgcgtgagtggcgctaccacatggacctc
aagctctggttcaagcgacagcagagcgagtcggcggcgctgcagtacatatactttgac
atcaacacgtgggagcggcgtctctttggcggcaacccgagcgcggtcagcgccggcttt
atgaccgacgacgacgtccgagtcaagtttaccccgacgccgtag
DBGET
integrated database retrieval system