KEGG   Saprolegnia parasitica: SPRG_06340
Entry
SPRG_06340        CDS       T04137                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
spar  Saprolegnia parasitica
Pathway
spar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPRG_06340
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_06340
   03036 Chromosome and associated proteins [BR:spar03036]
    SPRG_06340
Enzymes [BR:spar01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SPRG_06340
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     SPRG_06340
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     SPRG_06340
Chromosome and associated proteins [BR:spar03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    SPRG_06340
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 CMS1 ERCC3_RAD25_C Cas3-like_C_2 DUF6610
Other DBs
NCBI-GeneID: 24128689
NCBI-ProteinID: XP_012201109
UniProt: A0A067CC06
LinkDB
Position
Unknown
AA seq 421 aa
MSSNPPPPAPTPSQHSMGDEDDWKTGLKAPTKDTRFQTEDVTNVKGNDFEDYFLKRELLM
GIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKPYIQVMI
LVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYNTVHILVGTPGRIMDLA
NKGVADLSKCSTVIMDEADKLLSPEFQPLLEQLVNHTAPGRQICLFSATFPVTVKAFKDK
YIENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELL
AKKVTELGFSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFD
FPKNSETYLHRIGRSGRFGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgagcagcaaccctccgccccccgcgccgacgcccagccagcactcgatgggcgacgag
gacgactggaagacgggccttaaggcccctacgaaggacacgcgcttccagaccgaggac
gtcaccaacgtcaagggcaacgactttgaggactacttcctcaagcgcgagctcctcatg
ggcatcttcgagaagggctttgagcgcccgtcgccgatccaggaagaagccgtcccgatc
atcctcgcagggcgcaacgtcatggcgcgcgccaagaacgggaccggcaaaaccgcggcc
tttatcatcccgtgcctcgagaagacggacacatccaagccgtacatccaagtgatgatc
ctcgtcccgacaagagaattggcccttcagacctcggccattgtcaaggaaatcggcaag
cacatgggcgtggaatgcatggtgagcacgggcgggacaagcctcaaggacgacatcatg
cgcttgtataataccgtgcatattttggtcggcaccccgggtcgcattatggacctggcc
aacaagggtgtcgcggacttgagcaagtgctcaaccgtgatcatggacgaagccgacaag
ctcctgtcgcccgagttccagccgcttctcgaacagctcgtgaaccacacggcaccgggg
cggcaaatctgcctcttctcggctacgttcccggtgaccgtcaaggccttcaaggacaag
tacattgagaacccgtacgagatcaacttgatggacgagctgacgctcaagggtgtctcg
caattctacgcctttgtcgaggagcgccagaaggtgcactgcctcaacacgctcttctcc
aagctcgacatcaaccagagtatcatcttttgcaactcggtgaaccgcgtcgagctgctc
gccaagaaggtgacggagctcggcttctcgtgcttctacatccacgccaagatgaaccag
gcccaccgcaaccgcgtctttcacgaattccgcaacggcgctacgcgccacctcgtgtgc
tcggacctctttacgcgcggcatcgacatccagaccgtcaacgtcgtcatcaactttgac
ttccccaagaactcggagacgtatctccaccgcattggccgctcgggtcgcttcggccac
ctcggcctcgccatcaacatgatcacgtacgaagaccggttcaacttgtaccgtatcgag
caagagctcggcactgagatccgcccgattccgcccgtgatcgaccgcaacctctactgc
aagtag

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