Saprolegnia parasitica: SPRG_06558 Help Entry SPRG_06558        CDS       T04137                                  Name (RefSeq) hypothetical protein   KO K14442   ATP-dependent RNA helicase DHX36 [EC:5.6.2.6] Organism spar  Saprolegnia parasitica Pathway spar03018   RNA degradation Brite KEGG Orthology (KO) [BR:spar00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     SPRG_06558  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:spar03019]     SPRG_06558    03012 Translation factors [BR:spar03012]     SPRG_06558 Enzymes [BR:spar01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      SPRG_06558 Messenger RNA biogenesis [BR:spar03019]  Eukaryotic type   mRNA degradation factors    3'-5' decay     Other 3'-5' decay factors      SPRG_06558 Translation factors [BR:spar03012]  Eukaryotic type   Initiation factors    Initiation associated factors     SPRG_06558 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  R3H Helicase_C OB_NTP_bind DEAD HA2_C HA2_N AAA_22 AAA_19 T2SSE nSTAND3 ResIII AAA_16 Motif Other DBs NCBI-GeneID:  24128903 NCBI-ProteinID:  XP_012200762 UniProt:  A0A067CDA2 LinkDB All DBs Position Unknown AA seq 1166 aa AA seqDB search MNAPRTEYHVMQGSVPDVTTEAGRQLMDQVAAMDSGAMMTDGAPYDGRGFLDPSDRLYLV EQAQAGREKEERERALEKDAVRSFYEFQRKEGAKPRLQEVPDLVEKPVLPTTAPIVIVPK KKKKTTKRVAAPKAAPRAKKTKTTQPALVGYGSSSESESESPKSRGPPIALSEEFCMDIA TQLKELMNDPSIPHVVFPSSLDNTERRYIHTVAKKYGLFSKSKGKGDDRFIHVSRAKTTV NMETISLRISPAPLSVSMDTLQEMQDVLALDAPSPDRAQMAMPPPFRKPRAAFKSAFPPV APPHKYTSSQRALPAHAHRDEILALVQKHQVVVVAGDTGCGKSTQLPQFLMDAPGPARRI VVTQPRRISAITLAERISDERSLEVGKEVGYCIRLDAKYSHAATQLIFATTGTLLRWLGS DPLGKQFTHIVVDEVHERDKDTDFLLVVLKLILPLRPDLRVILMSATIQVDKFSAYFNQC PIVSIQGRMHPVQACFLDDVLLLLDSSVPSSKTKASTNERPKKKQRALDASCVMCGKCDF ADEGDFGMHVATCFGGQWVPPTATPDEALLLSMPADEDMEAPVDDAVLEGSVCDQVARRL AAKRAHAKPSVIDNLVSSYQLSQDALGIDGGVDVDLVVRLLGHLMSVSYGEGAILVFLPG WDDIQAIADVLDMQPVFRKCMIAILHSRLSPQEQKRAFARPPKGARKIILATNIAETSVT IEDVVYVIDTCKSKQSKLINGYSALHTEWVSDANCKQRRGRAGRVAPGVCFHLLTRQRFE SLPAFLTPELLTTSLEDSVLAIQMLQWQSGDSLGFESIGEFLSLAPDPPLTHVVEGAIAS LQALGALNSDESLTYLGWELSQMSLSPAIAKTLLLSTFHDVAAPILYSACALSYREPFES ELGTSGAQRNQRRLVKASLASGHESDHWVLYAAIYGFLLASDRDRSHYCRANGLLQPVLF HTSGVIKQIEVEFTSLGYAIPPPMGPPSPPMAMAVLASGLYPNLMYRDVGSVHYTTKDKF KVRRAGASVLSPKKPTSREWVVFHDMMQTEHARTAQVMTKVHPFTLALLVGASAVLEELP DVDDDDKKKDDDEDEAAFLDGVIVVIDGWIALQMEREVATLVLRLRQRLSDAFLNYVAAK SHASLSPADAALLHAVASWVGRETQR NT seq 3501 nt NT seq  +upstreamnt  +downstreamnt atgaacgctccgcggacggagtaccatgtcatgcagggctctgtgcccgacgtgacgacg gaggccgggcgccagctcatggaccaggtcgccgcaatggacagcggcgccatgatgacg gacggcgcgccgtacgatgggcgtggcttcttggacccgtcggaccggctgtacctcgtc gagcaggcgcaggccggccgcgagaaggaggagcgcgagcgagctctggagaaggacgcg gtccgatcgttctacgagttccagaggaaagaaggcgcgaaaccgcggctccaggaggtc ccagacctcgtcgagaaacctgtgctccccacaacggcgccgatcgtcatcgtgcccaag aagaagaagaagacgaccaagcgcgtggcggcgccgaaagcagcgccgcgcgccaagaag accaagacgacccagccagcgctcgtcggctatggctcgagcagcgaatccgaatccgaa tccccaaaatcgcgcgggccgccgatcgcgctctcggaagagttttgcatggacattgcc acgcagctgaaggagctcatgaacgacccgtcaattccgcacgtcgtgtttccgagctcg ctcgacaacacggagcgtcggtacatccacacggtcgcgaagaagtacgggctcttctcc aagagcaaaggcaagggcgacgaccgcttcatccacgtgagtcgcgccaagacgacggtc aacatggagacgatctcgctgcgcatctcgccggcgcctctgagcgtctcgatggacacg ctccaagagatgcaggacgtcttggcgcttgatgcaccctcgccagatcgcgctcaaatg gccatgccgccgccgttccgcaagccgcgagcggcgttcaagtcggcgttcccgcccgtg gcgccgccgcacaagtacacgagctcccagcgcgcgctgccggcgcacgcgcaccgcgac gagattctggcgctcgtgcagaagcaccaggtggtcgttgtcgccggcgacacgggctgc ggcaagtcgacgcagctgccgcagttcctcatggacgcgccgggcccggcgcggcgcatc gtcgtgacgcagccgcgacgcatctcggccatcacgctcgccgagcgcattagcgacgag cgcagcctcgaggtcggcaaggaggtcgggtactgcattcggctcgatgccaagtactcg cacgccgcgacgcagctcatctttgccacgaccggcacgctcctgcgctggctcgggagc gatccgctcgggaagcagtttacgcacatcgtcgtcgatgaggtccacgaacgcgacaag gacacggactttcttctcgtcgtgctcaagctcatcctgccgctgcgcccggacttgcgc gtgatcctcatgagcgcgacgatccaggtcgacaagttctcggcctactttaatcagtgc ccgatcgtgagcatccaaggccgcatgcaccccgtgcaagcgtgcttcctcgacgacgtg ctcctgctcctcgacagctccgtgccgagcagcaagaccaaagcgtcgaccaatgagcgg ccgaagaagaagcagcgggcgctcgacgcgtcctgcgtcatgtgcggcaagtgcgacttt gcggacgaaggggactttggcatgcacgtcgccacgtgctttggcgggcagtgggtaccg ccgacggcgacgccggacgaggcgctgctcctctccatgcctgcggacgaagacatggaa gcgcccgtggacgacgcggtcctcgaaggctcggtctgcgaccaagtggcgcgacgcctc gccgccaagcgcgcgcacgccaagcccagcgtcatcgacaacctcgtgtcttcataccag ctctcgcaagacgcgctcggcatcgacggcggcgtcgacgtggacctggtggtgcggctc ttgggccacctcatgtccgtgtcgtacggcgagggcgcgatcttggtcttcctgcctggc tgggacgacatccaagccatcgccgacgtcctcgacatgcagcctgtcttccgcaagtgc atgattgcgatcctgcattcgcgcctctcgccacaggagcagaagcgggcgtttgcgcgg ccgcccaagggggcgcgcaagatcattttggcgaccaacattgccgagaccagcgtgacg atcgaagacgttgtttacgtcatcgatacgtgcaagtcgaagcagtccaagctcatcaac ggctacagcgcgctgcacaccgagtgggtgagcgacgccaactgcaagcaacgccgcggc cgcgccggccgtgtcgcgcccggcgtctgctttcacctgctcacgcggcagcggttcgag tcgctgccggccttcttgacgcccgagctgctcacgacgtccctcgaagactcggtcttg gccatccagatgctgcagtggcagtcaggcgactcgctcggcttcgagtccattggcgag tttctgagcctcgcgcccgacccgccgctgacccacgtggtcgagggcgcgatcgcgtcc ttgcaggcgctcggcgcgctcaactcggacgagtcgctcacgtacctcgggtgggagctc tcgcagatgagcctctcgccagcgatcgccaagacgctgctgctcagcaccttccacgac gtcgccgcgcccatcttgtactcggcgtgtgcgctcagctaccgcgagccgttcgagtcg gagctcgggacgtccggcgcgcagcgcaaccagcgccggctcgtcaaggcgtcgctcgcg agcggccacgagagcgaccactgggtgctgtacgcagccatctacggcttcctcctcgcg tccgaccgcgaccgctcgcactactgccgcgccaacggcttgctccagcccgtcttgttc cacacgtcgggcgtcatcaagcagatcgaggtcgagttcacgagcctcggatacgcgatc ccgccgcctatgggcccgccgagcccgccgatggccatggccgtcctcgccagcggcctg tatccgaacctgatgtaccgcgacgttggctcggtccactacacgaccaaggacaagttc aaggtgcgtcgcgccggtgcgtcggtcctctcgcccaagaaacccacaagccgcgagtgg gtcgtcttccacgacatgatgcagaccgagcacgcgcgcacggcgcaggtgatgaccaag gtgcatccgttcacgctggcgctccttgtcggcgcgtcggccgttctcgaagagctgccc gacgtcgacgacgatgacaagaagaaggacgacgatgaggacgaggcggcgtttctcgac ggcgtcatcgttgtcattgacggctggatcgcgctgcagatggagcgcgaggtggccacg ctcgtgctgcgactgcgccagcgcctaagcgacgccttcctcaactacgtcgcggccaag agccacgcctcgctctctcccgccgacgccgcgctgcttcacgccgtggcgtcgtgggtc ggccgcgagacgcagcgctag

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