Saprolegnia parasitica: SPRG_06913 Help Entry SPRG_06913        CDS       T04137                                  Name (RefSeq) hypothetical protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism spar  Saprolegnia parasitica Pathway spar03018   RNA degradation Brite KEGG Orthology (KO) [BR:spar00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     SPRG_06913  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:spar03019]     SPRG_06913 Enzymes [BR:spar01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      SPRG_06913 Messenger RNA biogenesis [BR:spar03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      SPRG_06913   mRNA degradation factors    3'-5' decay     Ski complex      SPRG_06913 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT DEAD Helicase_C DEXQc_Suv3 Ski2_N ResIII MTR4-like_stalk AAA_22 PhoH nSTAND3 Motif Other DBs NCBI-GeneID:  24129230 NCBI-ProteinID:  XP_012201764 UniProt:  A0A067CLG9 LinkDB All DBs Position Unknown AA seq 1294 aa AA seqDB search MLERSCAAGPRSCILQARAASHPVLLPFPLVSSSPLPATDDDEAPLDPLASALASEQAPR VWPANPSRLLVEVPLSLHRADITPVTSRMVLEPTNLTYAFGRVVHDERSMAETSNSMLRK PTHLQEYARGKIGNVPFAPGGESLMKSTTAPTSTDAAIADEASMLKSAMASEMLDLAQRA LAAGSSSTNASADWSSLLVDAPGLTHGLTREDIARLTRGASPGDVAVTTAPAAVTVGVNP TDLLQPYYAVISDDESMKALQRSIADEKAVLAMTSNTLSIQSLLTDNDDDEDMDVLDAVD PADVVQEAPAATRSLAFAAASGSDATVEDADVDVTLDAVMTLMDSMATPAPAPVLEWASA EPIDVSNFHAKVPDMAMSFPFELDSFQKQAVVHLENHDCVFIAAHTSAGKTVVAEYAIAM SQKHMTRTIYTSPIKALSNQKYRDFRTKFGVDNVGLITGDVSINPQASCLVMTTEILRSM LYRGADVIRDIEWVIFDEIHYLNDSERGVVWEEVIIMLPEHVSMVFLSATTPNTFEFSDW IGPAGEVLTVMDPQGQFLSTNYSAAVQRLKPKESKTGPGRGSGGRGGGGGRGGGDKADWT KLIRILQEKQLLPVVVFAFSKRLCEESAHRLSGMDLSSSSERSEIHLFCNASISRLQGLD QHLPQVLQVREMLLRGIGVHHGGLLPILKEMVEILFARGLVKVLFSTETFAMGVNMPART VVFNGTRKHDGKAFRDLLPGEYTQMAGRAGRRGLDTVGTVIIACWGDAPDATSLRTMLMG TPTKLESQFRLTYNMILNLLRVEDMTVEDMIKRSFSEFRTQKALAAKDIPSAIQKAKKAL HALEADLNTTHGGHLDLTEVERFFLLQQSTKYKEQALVHAILNSRYAAAALCVGRVVVLS TTGLPDQLAILLQVDKAATRTVTVLALCHASFSPPVVAAKPSAMDFFKPKAQASTSTGLA PGAKGSLLGKHYVVLDVPETCLNKLTKVSGYRIASPNVRSLLEANDPSVLSRAVELLVDL ETSLPLFLSPQNDLKMMELESADLYSQVQHQYSVMEASPCFASPFLMPVLAQYAKIDRLR HYMATMTAALSNHSLSLFPDFQQRLRVLTRLGYIASDNTVQVKGRVACEVNTCEELVLTE IIFENVLADLEPEEIVAVLSALIFQEKTQNQPTLTPRLLHAQSTVHAIATSLGVIQLECH LEIDPTEFAKTTLNFGLMEVVYEWSRGMPFKSICELTDVPEGSIVRCITRLDEVCREVRN AARVIGDPRLYRKMEIASESIKRDVVFAGSLYLS NT seq 3885 nt NT seq  +upstreamnt  +downstreamnt atgcttgagcggtcatgcgccgctgggccccgctcctgcatcctgcaggctcgggcggcg tcgcacccggtgctcctgccgttcccgctcgtgtcgtcatcgccgctgccggcgacggac gatgacgaagcgccgctggatccgctggcgagtgcgctcgcgagcgagcaagcccctcgc gtgtggccagccaacccgagccgcttgctggtcgaagtcccgctctcgctgcaccgcgcc gatattacgcccgtcacgtcgcgcatggtgctcgagccgacgaacctcacgtacgccttc ggccgcgtcgtgcacgacgaacgctcgatggccgagacgtccaactcgatgctgcgcaag ccgacgcacctgcaagagtacgcgcgcggcaagatcggcaacgtcccattcgcgcccggc ggcgagtcgctcatgaagtcgacgacggcgccgacgtcgacggacgctgcgatcgccgac gaggcctcgatgctcaaaagcgcaatggccagcgagatgctcgacctcgcgcagcgtgcg ctggcggcgggcagcagcagtaccaacgcctcggcggactggagcagcctgcttgtcgac gcgccggggctgacgcacggcttgacgcgcgaggacattgcccgcctcacgcgtggcgcg tcaccgggtgatgtggcggtgactaccgcgcccgcggccgtcacggtgggcgtcaacccg accgatctcttgcagccgtactacgcggtcatctcggacgacgagtcgatgaaggcgctg cagcgatcgatcgccgatgaaaaagccgtcttggccatgacatccaacacgctttcgatc cagagcttgctgacagacaatgacgacgacgaggacatggacgttctcgacgccgtcgac ccggcagacgtcgtgcaagaggcgccggcagcgacgcggtccttggcgtttgcggcggca agtggcagcgacgcgacggtcgaagatgcggacgtggatgtgacgctggacgccgtcatg acgttgatggacagtatggcgacgccggcgccggcgccggtcctcgagtgggcgagcgcc gagcccattgacgtgtccaatttccacgccaaggtgcccgacatggccatgtcgtttccg ttcgagctcgactcgttccagaagcaagcggtggtgcatttggaaaaccacgactgcgtc tttatcgcagcccacacgtcggcgggcaaaacggtggtcgcggaatatgcgatcgccatg tcgcaaaagcacatgacgcgcacgatctacacgtcgccgatcaaggcactctcgaaccaa aagtaccgtgattttcgcacgaaattcggcgtcgacaacgtcggcttgatcacgggcgac gtctcgatcaacccgcaagcgagctgcctcgtcatgacgaccgagattctccgatccatg ctctaccgtggcgccgatgtgattcgcgacattgagtgggtcattttcgatgagattcac tacctcaacgactcggagcgcggcgttgtgtgggaagaggtcatcatcatgctgcccgag cacgtctcgatggtcttcttgtcggcgacgacgcccaacacctttgagttctccgactgg attggcccggccggcgaggtgctcaccgtgatggacccccaaggccaatttctctcgacc aactactcggccgcggtccagcgtctcaagcccaaagagtccaagacaggtcctggccgt ggcagtggcgggcgtggcggtggcggcgggcgtggcggcggcgacaaggccgactggacc aagctcattcgcatccttcaggaaaagcagttgctgcccgtcgtggtgtttgcgttcagc aagcgcctttgcgaagaatcggcccaccgtctctcgggcatggacctgagctcgtcctcg gagcgctccgaaatccatctcttctgcaacgccagcattagccgcctccagggcctcgac cagcacttgccgcaagtgcttcaagtgcgcgagatgctgctgcgtggcattggcgtgcac cacggcggtctgcttccgattctcaaggagatggttgaaattctgtttgcccgaggcttg gtcaaggtgctcttttcgaccgagacgtttgccatgggcgtcaacatgcccgcgcgcacg gttgtgtttaacggcacgcgcaagcacgacggcaaggcgttccgcgacttgctgccgggc gagtacacgcagatggcggggcgtgcgggtcgtcgtggcctcgacacggtcggcaccgtc atcattgcgtgctggggtgacgcgccagacgcgacgtcgctccgtacgatgctcatgggc acgccgacgaagctcgagagtcaattccggctcacgtacaacatgattctcaacctcctc cgcgtcgaagacatgacggtcgaggacatgatcaagcgatcgttctcggaattccgcacg caaaaggcgctggcggccaaggacattccgtcggccatccaaaaagccaaaaaggcactg catgcgctcgaggcggacctcaacaccacgcatggcggccacctggacttgaccgaagtc gagcgcttcttcctcctccagcagtcgaccaagtacaaggagcaagcgctggtgcacgcg attttaaactcgcggtatgctgcagccgcgctctgcgtcggtcgcgtcgttgtgctctcg acgacgggtctgcccgaccagctcgccatcctcctgcaagtcgacaaggcggcgacgcgg accgtgacggtcctcgcactgtgccacgcgtcgttctcgccgccagtcgttgcggccaag ccaagcgcgatggatttcttcaagcccaaagcgcaagcgagtacgtcgacgggcctcgcg ccgggcgccaagggctcgctcttgggcaagcactatgtcgtactcgacgtgccggaaacg tgcctcaacaagctcaccaaggtatctggataccgtatcgcaagcccgaacgtccggagc ctcctcgaagccaacgacccgagcgtgctctcgcgcgccgtcgagcttctcgtggacctc gagacgtcgctgccgctctttctgagtccgcaaaacgatctcaagatgatggagctcgag tcggccgacttgtacagccaggtgcagcaccagtacagcgtcatggaagcaagcccgtgc tttgcatcgcccttcctcatgcccgttctcgcccagtacgccaagattgaccgcctgcgc cactacatggcgacgatgacggccgcgctctccaaccactcgctctcgctttttcccgac tttcagcagcgacttcgcgtgctcacgcgcctcggatacattgcctcggacaacacggtg caggtcaagggccgggtcgcgtgcgaggtcaacacgtgcgaagaactcgtgctcacggaa atcatttttgaaaacgtcctcgccgacctcgaacccgaagaaattgtcgcggtgctctcg gcgctcattttccaggaaaagacccagaaccaaccgacgctgaccccgcgcttgctgcac gcgcagagcaccgtgcacgcgatcgcaacctcgcttggcgtcatccagctcgagtgccac ctcgaaatcgacccgacggaatttgccaagacgacgctcaactttggcttgatggaagtc gtgtacgagtggagccgcggcatgccgttcaagtcgatttgcgagctcacggacgtgccc gagggctcgatcgtgcgttgcatcacgcgtcttgacgaagtgtgccgtgaagtgcgcaac gcggcgcgggtgattggcgatccgcgcttgtaccgcaagatggagattgcgtccgagtcg atcaagcgcgacgtggtgtttgcgggcagcttgtacctgtcctag

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