Saprolegnia parasitica: SPRG_08578
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Entry
SPRG_08578 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
spar
Saprolegnia parasitica
Pathway
spar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPRG_08578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spar03041
]
SPRG_08578
Enzymes [BR:
spar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPRG_08578
Spliceosome [BR:
spar03041
]
Complex C
Other components
Step II factors
SPRG_08578
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
S1
AAA_22
DEAD
AAA_19
ABC_tran
AAA_14
nSTAND3
Cas3-like_C_2
GIPC1_GH2
SRP54
PhoH
OB_RRP5_4th
AAA_30
TsaE
T2SSE
AAA_16
NB-ARC
CoV_nucleocap
AAA_7
Cache_WalK
Motif
Other DBs
NCBI-GeneID:
24130792
NCBI-ProteinID:
XP_012203208
UniProt:
A0A067CI70
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MEKLQELSLISKVCSELESHLGMSERTLAEFIIDLARSSKDGKAFYAELSANGAEFPMTF
ALHLYQLVRTMTKKPAKKPILPTSDAPFPGLARPNSKPINDEALDVQDIAGLGDADRAPP
ASSRRDKSRSRSRDRYRKRSRSRSRDRRDRRRSRERERPVELHEIYNGRVSKLMDFGIFV
ELEGVRGTKEGLVHVRNISDARITHPKEVVRRGDRVKVKAISVSGKLMLSMRDVDQKTGR
DLMPMRATSGVDNRTDSKSWVNPTAPGMQEIDRDEYENTSRARAVQRMSSPERFEARQLI
NAGVLSVSEYPTFDDDHGLLNMEETEEEFEVELNEDEPTFLRGQTKAALEMSPVRIVKNP
DGSLSRAAMQQSSLAKERRELRQTQQNELLDSIPKDLNRPWEDPMPEAGERHFATELRGI
NMGSSFELPEWKSKAQGKNLSYGHVSAKSMIEQRESLPVFKLKGQLMQAIRDNQILVVIG
ETGSGKTTQMTQYMAEMGLTSRGMIGCTQPRRVAASSVAKRVAEEFGCALGQEVGYAVLI
KYMTEGMLMREYLADATLSRYSALILDEAHERTINTDVLFGLLKALVKKRPELKIIVTSA
TLDAEKFSHYFYDCPIFTIPGRTFPVEILYTKEPEADYLDAALITVMQIHLSEPEGDILV
FLTGQEEIDTACEVLYQRIKSLGALAPELIILPVYGALPSEMQTRIFEPAPKGSRKCVVA
TNIAEASLTIDGVYYVVDPGFQKEKAFNAKIGMDSLIVVPCSQASARQRAGRAGRTGPGK
CYRLYTEAAYKNEMLPTAIPEIQRTNLGTIVLQLKAMGINDLMGFAFLDPPPVPALIAAM
ENLYALGALDDEGLLTRLGKKMSEFPVEPKDAKVLLTSVVLGCSDEVLTIISMLAVENVF
FRPKEKQAQADSKKAKFNQPEGDQLTLLAVYEAWKHSKFSNPWCFENFIQARAIRRALDV
RKQLLSTMDRFKMDVVSAGKNYNKIRRAIVSGYFANSAKKDPQEGYRTMVEGQPVYIHPS
SSLFNKNPEWVIYQELVLTTKEYMRNVMAIDPKWLKGDPTKMTKQKKAQKIEPLHDRFNP
KDSWRLSQRRG
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctgcaggagctgagcttgatctccaaggtatgttcggagctcgagagtcac
ctgggcatgagtgagcgtacgctggcagagttcatcatcgacctcgcccgcagctccaag
gatggcaaggccttctacgccgagctctcggccaacggcgccgagttccccatgaccttt
gccttgcacctctaccagctcgtccgcacgatgaccaagaagccggccaagaagccaatc
ttgccgacgagcgacgcgccgtttcccggcctcgcgcggcccaactcgaagcccatcaac
gacgaggcgctcgacgtacaagacattgccggccttggcgacgccgaccgcgcgccgccg
gcctcgtctcgccgcgacaagagccggtctcggtcgcgcgatcggtaccgcaagcgcagc
cgcagtcgtagccgagaccgtcgggaccgccgtcggtcgcgcgagcgcgagcgcccagtc
gagctgcacgagatttacaacggccgggtctccaagctcatggactttggcatctttgtc
gagctggaaggcgtgcgcgggacgaaggaaggtcttgtccacgtgcgcaacattagcgac
gcgcgcattacgcacccgaaggaagtcgtccggcgcggtgaccgcgtcaaggtcaaggcc
atctcggtctcgggcaagctcatgctctcaatgcgcgacgtcgaccaaaagacaggtcgc
gacctcatgcccatgcgggccacctcgggcgtcgacaaccggaccgactccaagtcgtgg
gtcaacccgacggcgcccggcatgcaagaaattgaccgcgacgagtacgagaacacgagc
cgcgcgcgcgccgtccagcgcatgtcgtcgcccgagcgctttgaggcgcggcagctcatc
aacgccggcgtgctctccgtgtccgagtacccgaccttcgacgacgaccacggcttgctc
aacatggaggagaccgaagaggagtttgaggtcgagctcaacgaagacgagccgacgttc
ttgcgagggcagacgaaagcggcgctcgagatgtcgccggtccgcatcgtcaagaacccg
gacggatcgctctctcgtgcggcgatgcagcagtcgtcgctcgccaaggagcgccgcgag
ctccgccaaacgcagcagaacgagctcctcgactcgatcccaaaggaccttaaccgcccg
tgggaagatccgatgcccgaagccggcgagcgccactttgcgaccgagctccgcggtatc
aacatgggttcgtcctttgagttgcccgagtggaagagcaaggcgcaaggcaagaacctc
agctacggccacgtctcggccaagagcatgatcgagcagcgcgagagtctccccgtcttc
aagcttaagggccagctcatgcaagcgatccgcgacaaccagattctggtcgtcattggc
gagaccggcagcggcaagacgacgcagatgacgcagtacatggccgagatgggtctcacg
tcgcgcggtatgattggctgcacgcagccgcgccgtgtcgcggcgtccagcgtcgccaag
cgcgtcgcagaagagtttggctgcgcgctcggccaagaggtcggctacgccgtgctcatc
aagtacatgacggaaggtatgctcatgcgcgagtacctcgccgacgcgacgctctcgcgc
tactcggcgctgatcctcgacgaggcccacgagcgcacgatcaacacggacgtgctcttt
ggtttgctcaaagcactcgtcaagaagcgtccggagctcaagatcatcgtgacgagtgcg
accttggatgcggagaagttttcgcactacttctacgactgcccgatctttacgattccc
ggccgaacgttccccgtcgaaattctgtacacgaaggagccggaagccgactacctcgac
gcggcgctcatcacggtcatgcagatccacctcagcgaaccggaaggcgacattctcgtc
ttcctgacgggccaagaagagattgacacggcgtgcgaggtgctctaccagcgcatcaag
tcgctcggcgccctcgcgcccgagctcatcatcctcccggtctacggtgcgctgccgtcc
gagatgcagacgcgcatctttgagcctgcgcccaaaggctcgcgcaagtgtgtggtcgcg
accaacattgccgaggcgtcgctgacgatcgatggcgtctactacgtcgtggacccgggt
ttccaaaaggagaaggcgttcaacgctaagattggtatggactcgctcatcgtcgtgccg
tgctcgcaagcgtcggcgcggcagcgggccggtcgagccgggcgcacgggccccggcaag
tgctatcgtctctacacggaagcggcgtacaagaacgagatgcttccgaccgcgattccc
gagattcagcgcacgaacctcggcacgatcgtgctgcagctcaaggccatgggcatcaac
gacctcatgggctttgccttcctcgacccgccgcccgtccccgcgctcattgccgccatg
gagaacctctacgcgctcggcgcgctcgacgacgaagggctcttaacgcgcctcggaaag
aagatgtcggagtttcccgtcgagcccaaggacgccaaggtgctcttgacgagcgtcgtg
ctcggctgctcggacgaagtgctcacgatcatctcgatgctcgcggtcgagaatgtcttt
tttcgcccgaaggaaaagcaagcgcaagccgactcgaagaaggccaagttcaaccagccc
gaaggcgaccagctcacgctcctcgcggtgtacgaggcgtggaagcactcgaagttttca
aatccgtggtgttttgagaactttatccaagcccgcgcgatccgccgcgcgttggatgtc
cggaagcagctgctctcgaccatggaccgcttcaagatggacgtggtctcggcgggaaag
aactacaacaagattcggcgcgcgatcgtgtcgggctactttgccaactcggccaagaag
gatccgcaggaagggtaccgcaccatggtggaaggccagcccgtgtacatccacccgtcg
tcgtcgctcttcaataagaacccggagtgggtcatctaccaagaactcgtgctcacgacg
aaggagtacatgcgcaacgtcatggcgatcgaccccaagtggctcaagggcgacccgacc
aagatgaccaagcagaagaaggcgcagaagatcgagccgctccacgaccgcttcaacccc
aaggactcgtggcgtctcagccagcgtcgcggctaa
DBGET
integrated database retrieval system
