KEGG   Saprolegnia parasitica: SPRG_11298
Entry
SPRG_11298        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
spar  Saprolegnia parasitica
Pathway
spar03018  RNA degradation
spar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPRG_11298
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPRG_11298
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_11298
   03041 Spliceosome [BR:spar03041]
    SPRG_11298
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPRG_11298
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SPRG_11298
Spliceosome [BR:spar03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    SPRG_11298
SSDB
Motif
Pfam: LSM DUF150_C Peptidase_M23
Other DBs
NCBI-GeneID: 24133346
NCBI-ProteinID: XP_012205499
UniProt: A0A067CAL9
LinkDB
Position
Unknown
AA seq 96 aa
MASYLQEMVDHMVSVTTNDGRNFVGTLKGYDQCINIVLDDSFERIYSAKADVQVVDLGLY
IVRGDNIALIGEVEPNIKQQTQGDNARAEPMKPVTH
NT seq 291 nt   +upstreamnt  +downstreamnt
atggcgtcgtacctgcaagagatggtggaccacatggtctccgtgacgacgaacgacggg
cgcaactttgtgggcacgctcaagggctacgaccagtgcatcaacatcgtgctcgacgac
agcttcgagcgtatttattccgccaaggccgacgtgcaagtggtcgacttgggcttatat
attgtgcgtggcgacaacatcgccttgatcggggaagtcgagcccaacatcaagcagcaa
acgcaaggcgacaatgcgcgcgcagagccgatgaagcccgtgacgcattga

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