KEGG   Saprolegnia parasitica: SPRG_11569
Entry
SPRG_11569        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K12572  PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
spar  Saprolegnia parasitica
Pathway
spar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPRG_11569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_11569
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPRG_11569
  mRNA degradation factors
   3'-5' decay
    Pan complex
     SPRG_11569
SSDB
Motif
Pfam: Pan3_PK
Other DBs
NCBI-GeneID: 24133595
NCBI-ProteinID: XP_012206481
UniProt: A0A067C118
LinkDB
Position
Unknown
AA seq 620 aa
MAYNPTGSRFGAYAQDPRYPPLQPTAMADRSVTTSPPTAAAGGGGNTSQWASPPPVARPS
PKTSPLVNSELTSTAAPFVPKQHAAPEPMVQVTRGGCIFYVPESEAKATPTNAVLRHGPG
AQLHVDIQPPYAASASVIPSSPIVTTRRSLASMALAPTVRRQLDAEHEDMLRQVHPSDER
YKEIPSQFHCMWPLDVQDDALHRNVAGSFGYPSHCYKVISETDGRTYALRRVENVRTTPG
ITQQAVDKWKKVVHANVVPSTARSCPMAVPPLDGNDDVSSSRVALFFLSEYFPTATSLHA
KFFTSQASIASEAFLWSLLTQMAGALRAIHRHDMACQAIGLRRLLVTGHNRVRISGTGVL
DVLEYDTSKSKRVEALQQEDLINLGKVVLSLGVRQEISATTNGTSMRPLPGLMLARLVTD
LLSQFASTFSDDLTAVVRGLTLQETASATELALTLFDRTQAELDAQYSLADELEAQLSSE
YQNGRMLLLMLKLGLINERPDLNMDSSWAETGDRYLLKLFRDFVFHQVDEENRPVLDFGH
IVDALNKLDGASAEKVLLSSRDGQSVLVASYAEVHKCVKQAFSELVAAAQRQRPSTTPLA
KPAAFGGRATNGRGRGRGRG
NT seq 1863 nt   +upstreamnt  +downstreamnt
atggcctacaaccccactggatcgcgcttcggggcctacgcccaagacccgcgctacccg
ccactccagccgaccgccatggccgaccggtccgtgacaacatcgccgccgacagccgcc
gccggcggcggcggcaatacgtcgcaatgggcgtcgccacctccagtcgcccgcccgagc
cccaagacgtcgccgctcgtcaatagcgagctcacctcgacggccgcgccgttcgtgccc
aagcagcacgcagcgcccgagcccatggtgcaggtcacgcggggtggctgcatcttttac
gtgcccgagtccgaagccaaagcgacgccgacgaacgctgtcttgcggcacgggcccggc
gcgcagctccacgtcgacattcagccgccgtacgctgcgtctgcgtctgtcatcccctct
tcaccgattgtgacaacgcgccggtcgctggcgtccatggcactggcgccgaccgtccgg
cgtcagctggatgctgagcacgaagatatgctgcggcaggtgcatccgtccgacgagcgc
tacaaggagattccgtcgcagttccattgcatgtggccgctcgacgttcaagacgatgcg
ttgcatcgcaacgtggccggcagctttgggtatccctcgcactgctacaaggtgattagc
gagacggacgggcgcacgtatgctctgcgccgcgtcgagaacgtgcgcacgacgccaggg
atcacgcagcaagcagtcgacaagtggaagaaggtggttcacgccaacgtcgtgccctcc
accgcgcgttcgtgtcccatggcggtacctcctctcgacggaaatgacgacgtgtcatcg
tcgcgagtagcgctcttctttctctccgagtacttcccgacggccacgtcattgcacgcc
aagttctttaccagccaagcatcgatcgcgtccgaggcgttcctctggagtctgctgaca
caaatggccggcgcgctccgggccatccatcgccacgacatggcctgtcaagccatcgga
ctccgacggctcctcgtcacggggcacaaccgtgtgcgcatcagtggcacgggtgtcctc
gacgtcctcgagtacgacacgtcgaaatccaagcgtgtggaggcgcttcagcaagaggac
ttgattaacctcggcaaggtcgtgctcagccttggtgtccgtcaagagatttccgccacc
accaatggtacgtcgatgcggcctctgcctggtctgatgttggcgcggctagtgacggac
ctcctttcgcagtttgcgagcaccttctcggacgacctcaccgccgtcgtccgtggtctc
actctccaagagacggcctcggcgaccgagttggcgttgacgctctttgaccgcacccaa
gccgagctcgacgcgcagtacagtctggccgatgagctcgaagcgcagttgtcgtccgag
taccagaacggccgcatgttgctgttgatgctcaagctgggtctcatcaacgaacgccct
gatctcaacatggacagcagctgggccgagacgggcgaccgctacctcctcaagctcttc
cgcgacttcgtgttccaccaggtcgatgaggagaaccgaccggtgctggactttggccac
attgtcgacgccctcaacaagctcgacggtgcgtcagccgagaaggtcctcctctcgtcc
cgggacggccagtcggtcttggtcgcgtcgtatgccgaagtccacaagtgtgtcaagcag
gcgtttagcgagctcgtggccgcggcccagcgccagcgcccgtcgacgacgccactcgcc
aagcccgcagcgtttggcggccgcgccaccaacggccgtgggcgcgggcgaggccggggc
taa

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