Saprolegnia parasitica: SPRG_11569
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Entry
SPRG_11569 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
spar
Saprolegnia parasitica
Pathway
spar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPRG_11569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spar03019
]
SPRG_11569
Messenger RNA biogenesis [BR:
spar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPRG_11569
mRNA degradation factors
3'-5' decay
Pan complex
SPRG_11569
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
Motif
Other DBs
NCBI-GeneID:
24133595
NCBI-ProteinID:
XP_012206481
UniProt:
A0A067C118
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MAYNPTGSRFGAYAQDPRYPPLQPTAMADRSVTTSPPTAAAGGGGNTSQWASPPPVARPS
PKTSPLVNSELTSTAAPFVPKQHAAPEPMVQVTRGGCIFYVPESEAKATPTNAVLRHGPG
AQLHVDIQPPYAASASVIPSSPIVTTRRSLASMALAPTVRRQLDAEHEDMLRQVHPSDER
YKEIPSQFHCMWPLDVQDDALHRNVAGSFGYPSHCYKVISETDGRTYALRRVENVRTTPG
ITQQAVDKWKKVVHANVVPSTARSCPMAVPPLDGNDDVSSSRVALFFLSEYFPTATSLHA
KFFTSQASIASEAFLWSLLTQMAGALRAIHRHDMACQAIGLRRLLVTGHNRVRISGTGVL
DVLEYDTSKSKRVEALQQEDLINLGKVVLSLGVRQEISATTNGTSMRPLPGLMLARLVTD
LLSQFASTFSDDLTAVVRGLTLQETASATELALTLFDRTQAELDAQYSLADELEAQLSSE
YQNGRMLLLMLKLGLINERPDLNMDSSWAETGDRYLLKLFRDFVFHQVDEENRPVLDFGH
IVDALNKLDGASAEKVLLSSRDGQSVLVASYAEVHKCVKQAFSELVAAAQRQRPSTTPLA
KPAAFGGRATNGRGRGRGRG
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcctacaaccccactggatcgcgcttcggggcctacgcccaagacccgcgctacccg
ccactccagccgaccgccatggccgaccggtccgtgacaacatcgccgccgacagccgcc
gccggcggcggcggcaatacgtcgcaatgggcgtcgccacctccagtcgcccgcccgagc
cccaagacgtcgccgctcgtcaatagcgagctcacctcgacggccgcgccgttcgtgccc
aagcagcacgcagcgcccgagcccatggtgcaggtcacgcggggtggctgcatcttttac
gtgcccgagtccgaagccaaagcgacgccgacgaacgctgtcttgcggcacgggcccggc
gcgcagctccacgtcgacattcagccgccgtacgctgcgtctgcgtctgtcatcccctct
tcaccgattgtgacaacgcgccggtcgctggcgtccatggcactggcgccgaccgtccgg
cgtcagctggatgctgagcacgaagatatgctgcggcaggtgcatccgtccgacgagcgc
tacaaggagattccgtcgcagttccattgcatgtggccgctcgacgttcaagacgatgcg
ttgcatcgcaacgtggccggcagctttgggtatccctcgcactgctacaaggtgattagc
gagacggacgggcgcacgtatgctctgcgccgcgtcgagaacgtgcgcacgacgccaggg
atcacgcagcaagcagtcgacaagtggaagaaggtggttcacgccaacgtcgtgccctcc
accgcgcgttcgtgtcccatggcggtacctcctctcgacggaaatgacgacgtgtcatcg
tcgcgagtagcgctcttctttctctccgagtacttcccgacggccacgtcattgcacgcc
aagttctttaccagccaagcatcgatcgcgtccgaggcgttcctctggagtctgctgaca
caaatggccggcgcgctccgggccatccatcgccacgacatggcctgtcaagccatcgga
ctccgacggctcctcgtcacggggcacaaccgtgtgcgcatcagtggcacgggtgtcctc
gacgtcctcgagtacgacacgtcgaaatccaagcgtgtggaggcgcttcagcaagaggac
ttgattaacctcggcaaggtcgtgctcagccttggtgtccgtcaagagatttccgccacc
accaatggtacgtcgatgcggcctctgcctggtctgatgttggcgcggctagtgacggac
ctcctttcgcagtttgcgagcaccttctcggacgacctcaccgccgtcgtccgtggtctc
actctccaagagacggcctcggcgaccgagttggcgttgacgctctttgaccgcacccaa
gccgagctcgacgcgcagtacagtctggccgatgagctcgaagcgcagttgtcgtccgag
taccagaacggccgcatgttgctgttgatgctcaagctgggtctcatcaacgaacgccct
gatctcaacatggacagcagctgggccgagacgggcgaccgctacctcctcaagctcttc
cgcgacttcgtgttccaccaggtcgatgaggagaaccgaccggtgctggactttggccac
attgtcgacgccctcaacaagctcgacggtgcgtcagccgagaaggtcctcctctcgtcc
cgggacggccagtcggtcttggtcgcgtcgtatgccgaagtccacaagtgtgtcaagcag
gcgtttagcgagctcgtggccgcggcccagcgccagcgcccgtcgacgacgccactcgcc
aagcccgcagcgtttggcggccgcgccaccaacggccgtgggcgcgggcgaggccggggc
taa
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