KEGG   Saprolegnia parasitica: SPRG_11947
Entry
SPRG_11947        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K10755  replication factor C subunit 2/4
Organism
spar  Saprolegnia parasitica
Pathway
spar03030  DNA replication
spar03410  Base excision repair
spar03420  Nucleotide excision repair
spar03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SPRG_11947
   03410 Base excision repair
    SPRG_11947
   03420 Nucleotide excision repair
    SPRG_11947
   03430 Mismatch repair
    SPRG_11947
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spar03032]
    SPRG_11947
   03036 Chromosome and associated proteins [BR:spar03036]
    SPRG_11947
   03400 DNA repair and recombination proteins [BR:spar03400]
    SPRG_11947
DNA replication proteins [BR:spar03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    SPRG_11947
  DNA Replication Termination Factors
   ELG1-RFC complex
    SPRG_11947
Chromosome and associated proteins [BR:spar03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    SPRG_11947
DNA repair and recombination proteins [BR:spar03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     SPRG_11947
  Check point factors
   HRAD17(Rad24)-RFC complex
    SPRG_11947
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 RCF1-5-like_lid AAA_lid_RFC1 Rad17 AAA_16 AAA_assoc_2 RuvB_N AAA_22 AAA_11 ResIII Mg_chelatase AAA_14 AAA_24 bpMoxR AAA_2 nSTAND_NTPase5 AAA_5 AAA_28 AAA_3 SLFN-g3_helicase DUF815 AAA_7 AAA_19 AAA_30 Gp44_lid RNA_helicase TIP49 MalM_C
Other DBs
NCBI-GeneID: 24133953
NCBI-ProteinID: XP_012206214
UniProt: A0A067BXV5
LinkDB
Position
Unknown
AA seq 328 aa
MATKTTLPWVEKYRPKNVSDISHQDEVVNTLKSSIANGQLPHLLFYGPPGTGKTSTIIAV
ARELFGPKFRENGRFLELNASDDRGISVVREKVKAFAQGAISGSSSMPPFKIIVLDEADS
MTNDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRYQPLEVTSMTARIQYI
CGQEDVTCAQDAVDTLLEVSSGDLRKAINYLQSAKQLNGAEITKDDILAIAGVAPKELFD
KLWRHVESNSFDLMKNEVDDIIYSGFPVLTILHQLVDEILAHKSMSPGKKATVCLRVAEA
DKKLGDGASEHLQLLDVASFLMQTYHET
NT seq 987 nt   +upstreamnt  +downstreamnt
atggccaccaagacgacgcttccgtgggtcgagaagtaccgcccgaagaacgtcagcgac
atctcgcaccaggacgaggtcgtcaacacgctcaagtcgtcgatcgcgaacggccagctg
ccccacctgctcttctacggcccgccgggcacgggcaagacgtcgacgatcattgcggtc
gcgcgtgagctctttggccccaagttccgcgagaatggccggttcctcgagctcaacgcg
tccgacgaccgcggtatcagcgtcgtgcgcgagaaggtcaaggcgttcgcccaaggcgca
atcagtgggtcgtcgtccatgccgccgttcaagatcattgtgctcgacgaagccgactcg
atgaccaacgacgcgcagtcggcgctgcgtcgcatgatggaaaactactccaaggtcacg
cgcttctgcctcatctgcaactacgtgagccggatcatcgagcctgtcgcgtcgcgctgc
gccaagtttcgctaccagccgcttgaagtgacctccatgacggcgcgcatccagtacatt
tgcgggcaagaggacgtgacgtgcgcgcaggacgcagtggacacgctcctcgaagtctcg
agcggggatttgcgcaaggcaatcaactacctccagagcgccaagcagctcaatggcgcc
gagatcacaaaagacgacatcttggccatcgcaggcgtggcccccaaggagctctttgac
aagctctggcgccacgtcgagtccaactcgtttgatctgatgaagaacgaagtcgacgac
attatttacagcgggtttcccgtgctcacgatcttgcaccagctcgtggacgagatcctt
gcgcacaagagcatgtccccgggcaagaaggcgacggtctgcctccgcgttgccgaagcc
gacaagaagctcggcgacggcgcgagcgagcacctccagctcctcgacgtcgcgtcgttc
ctgatgcaaacataccacgagacgtaa

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