KEGG   Saprolegnia parasitica: SPRG_12757
Entry
SPRG_12757        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
spar  Saprolegnia parasitica
Pathway
spar03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPRG_12757
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spar03021]
    SPRG_12757
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_12757
Transcription machinery [BR:spar03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SPRG_12757
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SPRG_12757
    U7-dependent histone pre-mRNA processing factors
     SPRG_12757
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Anti-Pycsar_Apyc1 Lactamase_B_2 Lactamase_B_3 Beta_lactamase3 HK-GC-Chemotax_sensor Strep_his_triad
Other DBs
NCBI-GeneID: 24134691
NCBI-ProteinID: XP_012206861
UniProt: A0A067BVA1
LinkDB
Position
Unknown
AA seq 744 aa
MAKRKGESDIVDERHVMRIMPLGAGNEVGRSCIILKFQGKTIMLDCGVHPGYSGHGSLPF
FDSIEAEEIDLLLITHFHIDHVAALPHFTEKTNFKGKIFMTHPTKAVMQMMLRDFLRVSN
ISVDDQIYDDRDLANCVAKVEIIDFHQEKMFNGIKFTPYNAGHVLGACMFLIEIGGVKVL
YTGDYSLENDRHLMAAEIPGVSPDVLIVESTYGVQVHQSVFEREGRFTGQVESVVRRGGR
CLIPVFALGRTQELLLILDEHWQQHPDLHGVPIYFASKLAAKALRVYQTYINMMNDRIRK
QISISNPFQFEHIHNLKSLEDFDDSGPSVVMASPGMLQSGVSRQLFERWCTDKRNACLIP
GYVVEGTLAKKILSEPTEITAMDGRLLPMNCSVEYISFSAHADFVGTSGFIEKVAPPNIV
LVHGEKNEMMRLKSALHKKFHNPKVYAPTIHTPANTQEIVLEFRGEKMAKAIGTMATTIA
GHQKLKAVDKKIPISGLLVEHDFHTHIMEKDDLAQYTSNLLVGTIAQRQHVPFVHQPFDV
LVAMIQQMYADVTVTSDTVVVNGQVMVTHCPPEKVLIEWSAEPTADMIADSVVALTMHAQ
ASPASFKISMHPHAACKHDHRPKTSVASEEAVKVEDGTEPLEADVIEDEGLQAAVETLAD
EGDLEALQLILVFRVLKDQYGQVELDHATNVISIITPSGAMASIHYFEKQPHDRVECENT
ALYEKLLETLAKLDQALLPVPKDA
NT seq 2235 nt   +upstreamnt  +downstreamnt
atggcgaagcgcaagggcgagtccgacatcgtggacgagcgccatgtcatgcgcatcatg
ccactgggcgcgggcaatgaggtcggccgctcgtgcatcatcctcaagttccagggcaag
accatcatgctcgactgcggcgtccacccgggctactcggggcatggctcgctgccgttc
ttcgactcgatcgaggccgaagagatcgacttgctccttatcacgcacttccacatcgac
cacgtggccgcgctcccgcactttacggagaagaccaactttaagggcaagatcttcatg
acgcacccgaccaaggccgtcatgcagatgatgctgcgcgatttcctccgcgtctccaac
attagcgtcgacgaccagatctacgacgaccgcgacctcgccaactgcgtcgcaaaggtc
gagatcatcgactttcaccaggaaaagatgtttaacggcatcaagttcacgccgtacaac
gcgggccatgtgctcggcgcgtgcatgtttctcatcgaaatcggtggcgtcaaggtcctc
tacacgggcgactactcgctcgagaacgaccgccatctcatggccgccgagattcccggc
gtctcgcccgacgtgctcattgtcgagtcgacgtacggcgtgcaggtgcaccagagcgtc
tttgaacgcgagggtcgcttcacgggccaggtcgagtcggtcgtccgtcgcggcgggcgc
tgcttgattcctgtgtttgcgctgggccgcacgcaagagctgctgctcattctcgacgag
cactggcagcagcacccggatctgcacggcgtgcccatctactttgcctccaagctcgcg
gccaaggcgctgcgcgtgtaccagacgtacatcaacatgatgaacgaccgcatccgcaag
caaatctccatctccaacccgtttcagtttgagcacattcacaacctcaagagcctcgaa
gacttcgacgactcgggcccgagcgtcgtcatggcctcgcccggtatgcttcaatcgggc
gtctcgcgccagctctttgagcggtggtgcacggacaagcgcaacgcgtgcttgattcca
ggctacgtggtcgagggcacgctggccaagaagatcttgtccgaaccgaccgagatcacg
gccatggacggccgcctcctcccgatgaactgctcggtcgagtacattagtttttcggcc
catgccgattttgtgggcacctcgggctttatcgaaaaggtcgcgccgcccaacattgtg
ctggtccacggcgaaaagaacgagatgatgcgtcttaagtcggccttgcacaagaagttt
cacaaccccaaggtgtacgcacccacgatccatacgccggccaacacgcaagagatcgtg
ctcgagtttcgcggcgaaaagatggccaaggccattggcacgatggcgaccacaattgcg
ggccaccaaaagctcaaggccgtcgacaagaagattccgatcagcggtctcctcgtcgag
cacgactttcacacgcatatcatggagaaggacgacctcgcccagtacacgtccaacttg
ctcgtcggcacgattgcccagcgccagcatgtgccctttgtgcatcagccgtttgacgtg
ctcgtggccatgatccagcaaatgtacgcggacgtgaccgtgacatcggacacggtcgtc
gtgaatggacaagtcatggtgacgcactgcccgccggagaaggtgctcatcgagtggagc
gccgagccgaccgccgacatgattgccgactcggtcgtcgcgctcaccatgcacgcgcag
gcgagtcctgcgagcttcaagattagcatgcaccctcacgccgcgtgcaagcacgaccac
cgccccaagacgagtgtggcctcggaagaggcggtcaaggtcgaggacggcaccgagccc
ctcgaagccgacgtgattgaagacgagggcttgcaggccgctgtcgagacactcgccgac
gaaggcgacctggaggccctccagctcatcttggtcttccgcgtgctcaaggaccagtac
ggccaggtggaactcgaccacgcgacgaacgtgatttccatcatcacgccgagcggcgcg
atggccagcatccactactttgagaagcagccgcacgaccgcgtcgagtgcgagaacacg
gcgctgtacgagaagctgctcgagacgctcgccaagctcgaccaagcgctcctgcccgtg
cccaaagacgcgtaa

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