Saprolegnia parasitica: SPRG_12931
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Entry
SPRG_12931 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
spar
Saprolegnia parasitica
Pathway
spar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPRG_12931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spar03041
]
SPRG_12931
Enzymes [BR:
spar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPRG_12931
Spliceosome [BR:
spar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SPRG_12931
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
SRP54
nSTAND3
AAA_7
TsaE
Motif
Other DBs
NCBI-GeneID:
24134847
NCBI-ProteinID:
XP_012208149
UniProt:
A0A067BWE5
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MSGKRKDRAQKRRRDDDDDDDETVEVGAALSAYQQRKQQQQRGDGSGDEGDELDEDQRER
RAFEERMRLKDEERTRKRSGQKEESLDQAELRELATRGSVADKVRDAAIEARRAASRREF
LRMRTEKMSKLVDYAVKDDALMFGDDVSKKELEKRTLQETILSIERAKARGDTIDAYQIP
DASDQYDADGNRVKKTVEDFSIVERDDEGPVKTEQEIWEETQLKNARKDALYGAQDRKAE
VVYELEMDDQIEFISQQMMAGHNVSTEDIKDARKRAEENQHMSMLEARKQLPIYAYREVL
LEAVRDHQVIIMVGETGSGKTTQVPQYLHEVGYSEMGKIGCTQPRRVAAMSVAARVAHEM
NVKLGNEVGYSIRFEDCTSEKTKVKYMTDGMLLREFLTEPDLKSYSCLIIDEAHERTLST
DILFGLIKDISRYREDLKIIIASATLDAEKFSEYFDNAPIVKIPGRMFPVDILYTRAPEA
DYLDAAIVTVLQIHITQPPGDILVFLTGQEEIETAEELLLFRTRGLGSRIRELLIRPIYA
TLPSERQAQVFETTPPNARKVVIGTNIAETSLTIPGICYVIDAGFCKQTNYNPQTGMESL
LVTPISQAMANQRAGRAGRTQPGKCFRLYTAWSYQHELDETTIPEIQRTNLGTVVLLMKS
LGINDLLHFDFMDPPPEKSLIRALEQLYALGALNDRGELTKLGRRMAEFPLDPMMSKALL
ASEKYGVSEEVMTVCAMLSVNNTIFYRPKDKAVHADNARLNFARGGGGDHICLLNVYNQW
VETNYSTQWTYENFVVMRALKTARDIREQLAGLCDRVEIEKTSNPHNTEAVRKALCAGFF
YNTAKLDNSGAYKTVKQKHSVHIHPSSCLVKLEEMPRWVVFHELAFTSKEYMRQVAPIKA
EWLTEIAPHYYKTKDVEDSSSKKMPKLTGRA
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggaagcggaaggaccgagcgcagaagcgccgccgagacgacgacgacgacgat
gatgagaccgtcgaagtcggcgccgctctctcggcttatcagcagcgcaagcagcagcag
cagcgaggcgacgggtctggcgatgaaggcgatgagctcgacgaggaccagcgcgagcgc
cgggcgttcgaggagcgcatgcggctcaaggacgaagagcgcacgcgcaagcggtccggc
cagaaggaagagtcgctcgaccaggccgagctgcgcgagcttgcgacgcgcgggtccgtg
gcggacaaggtgcgcgacgcggcgatcgaggcccggcgcgcggcgagccggcgcgagttc
ctgcgcatgcgcacggagaagatgtccaagctcgtcgactacgcggtcaaggacgacgcg
ctcatgttcggcgacgacgtgtccaagaaggagctcgagaagcggacgctccaggagacg
atcctctcgatcgagcgggccaaggcgcggggcgacacgattgacgcgtaccagatcccg
gacgcgagcgaccagtacgacgctgacgggaaccgcgtgaagaagacggtcgaggacttt
tcgatcgtcgagcgcgacgacgaaggcccggtcaagacggagcaagagatctgggaagag
acgcagctcaagaacgcccggaaggacgcgctgtacggcgcgcaggaccggaaggccgaa
gtcgtgtacgagctcgagatggacgaccagatcgagttcatctcgcagcagatgatggcc
ggccacaacgtcagcacggaggacattaaagatgcgcgcaagcgcgccgaggagaaccag
cacatgagcatgctcgaggcgcgcaagcagctgccgatctatgcgtaccgcgaggtgctt
ctcgaggccgtgcgcgaccaccaggtcatcatcatggtcggcgagactgggtcgggcaag
acgacgcaggtgccgcagtacctccacgaggtcggctactcggagatgggcaagatcggg
tgcacgcagccgcgccgagtcgcggccatgagcgtggccgcccgcgtcgcccacgaaatg
aacgtcaagctcggcaacgaagtcgggtattcgatccggtttgaagactgcacgtccgag
aagaccaaggtcaagtacatgacggacggcatgcttcttcgcgagttcctcaccgagccg
gacctcaagagctacagctgcctcatcatcgacgaagcgcacgagcgcacgctgagcacg
gacatcctctttggcctcatcaaggacatttcgcgctaccgcgaagacctcaagattatc
attgcgtccgcgacgctggatgcggaaaaattctccgagtactttgacaatgcgccgatc
gtcaagattccggggcgcatgtttcccgtcgacatcctctacacgcgcgcgccggaagcc
gactacctcgacgccgcgatcgtcacggtgctgcagatccacattacgcagccgccaggc
gacattctcgtcttcttgaccggccaagaagagatcgagaccgccgaagagctgctgttg
tttcggacgcgcggtctcggctcccggattcgcgagctcctgattcggcccatttacgcg
acgctgccgtccgagcggcaggcgcaagtgttcgagacgacgccaccgaacgcgcgcaag
gtcgtgatcgggaccaacattgccgagacgtcgctgacgattccgggcatttgctatgtc
attgacgcgggcttttgcaagcagaccaactacaacccacagacgggcatggagtcgctc
ctcgtgacaccgatctcgcaggcgatggccaaccagcgcgccggtcgcgccggccgaacg
cagcccggcaagtgcttccgcctctacacggcgtggtcgtaccagcacgagctcgacgag
acgacgattcccgagatccagcgcacgaacctcgggacggtcgtgctcttgatgaagtcg
ctcggtatcaacgacttgctgcactttgactttatggacccgccgccggaaaaatcgctc
atccgggccctcgagcagctgtatgcgctcggcgcgctcaacgaccgcggcgaactcact
aagctcgggcgccgcatggccgagtttcctctcgacccaatgatgtcgaaggcgctcttg
gcgtctgaaaagtacggcgtctcggaagaggtcatgacggtctgcgcgatgctgagcgtc
aacaacacgatcttttaccggccaaaagacaaggctgtccacgccgacaacgcgcgcctc
aactttgcgcgcggcggcggcggcgaccacatctgcctcctcaacgtctacaaccagtgg
gtcgagaccaactactcgacgcagtggacgtacgagaactttgtcgtgatgcgcgcgctc
aagacggcgcgcgacatccgcgagcagctcgccggcctctgcgaccgcgtggagatcgag
aagacgtccaacccgcacaacacggaggcggtgcggaaagcgctctgcgccggctttttc
tacaacacggccaagctcgacaactcgggcgcctacaagacggtcaagcaaaagcactcg
gtgcacatccacccgtcgtcgtgcctcgtcaagctcgaggagatgccgcgctgggtcgtc
ttccacgagctcgcgttcacgtcgaaggagtacatgcgccaggtcgcgcccatcaaggcc
gagtggctcacggagatcgcgccgcactactacaagaccaaggatgtcgaagactcgtcg
tccaagaagatgcccaagctcacgggtcgagcttaa
DBGET
integrated database retrieval system
