KEGG   Saprolegnia parasitica: SPRG_13939
Entry
SPRG_13939        CDS       T04137                                 
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
spar  Saprolegnia parasitica
Pathway
spar03013  Nucleocytoplasmic transport
spar03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spar00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPRG_13939
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPRG_13939
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spar03019]
    SPRG_13939
   03041 Spliceosome [BR:spar03041]
    SPRG_13939
Messenger RNA biogenesis [BR:spar03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     SPRG_13939
Spliceosome [BR:spar03041]
 Complex C
  Other components
   EJC/TREX
    SPRG_13939
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SPRG_13939
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_Gbeta EIF3I Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_Aladin WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st DSE1_N WDR90_beta-prop_4th Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_VPS8 Beta-prop_TEP1_C Beta-prop_WDR75_1st Tricorn_2nd PAC11 TRM82_WD Beta-prop_IFT140_1st KNTC1_N Beta-prop_NOL10_N CFAP251_N WD40_like VID27 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_WDR41 Beta-prop_NWD2_C WD40_RFWD3 Beta-prop_Nup120_160 Cytochrom_D1 DUF7099 Beta-prop_NUP159_NUP214 DUF8709 DUF7165 B-prop_COPA_B_2nd RexA
Other DBs
NCBI-GeneID: 24135775
NCBI-ProteinID: XP_012208263
UniProt: A0A067C366
LinkDB
Position
Unknown
AA seq 339 aa
MSELPPLAPKPRVDFQSFRPETYGTVAPLSELSGHSKYTYALGWNAAGSLLASGSTDRSL
RIWDPETNMLVTDCVGHGDSVNQLTWDPTSNTRVASTSGDKTVRIWDTKSSKATANLPFS
SEIMNLAYSKDGKYIAAGHNDTTIYLIDTRKNKMVRRIVNLFDVNELQFSKSGFLFVAAG
HPSGYGTFEVMKIAQDDKAVAPTLENVTKVIAHSGSCFAMDLDPTGRRLALGGADSLVSI
WDLEEVYCEHTFIGSQSLIRTVSFSHDGMFLASGSEDPCIPILHVPTGELAFSIGMTDSP
QQIAWHPAKPVLAYVGDKGALEKNKDRLGAIKLVSLKAP
NT seq 1020 nt   +upstreamnt  +downstreamnt
atgagcgagctaccgccgctggcgcccaagccgcgcgtcgacttccagtcgttccggccc
gagacgtatggcacggtcgcgcctctctccgagctctcggggcactccaagtacacgtac
gcgctgggctggaacgcggccgggagcctcctcgcgtctggcagcacggaccggtcgctg
cgcatttgggaccccgagacgaacatgctcgtgaccgactgcgttggccacggcgactcg
gtgaaccagctgacgtgggacccgacgagcaacacgcgtgtggcgtcgacgtccggcgac
aagaccgtgcgcatctgggacacgaaatcgtccaaggccacggccaacctgcccttctcg
tccgagatcatgaacctcgcgtacagcaaggatggcaagtacattgccgcgggccacaac
gatacgacgatctacctcattgacacgcgcaagaacaaaatggtgcggcgcatcgtcaac
ctcttcgatgtgaacgagctccagttctccaagtcgggcttcctcttcgtcgcggctggc
catccgtcggggtacggaacgtttgaggtcatgaagattgcacaagacgacaaggccgtc
gcgccgacgctagagaacgtgaccaaggtcattgcgcactcgggcagctgctttgcgatg
gacctcgaccccaccggccggcgactggcactcggcggcgccgactcgctcgtgagcatt
tgggacctcgaggaagtttactgcgagcacacgttcattgggtcgcagtcgctcatccga
acggtgtcgttctcgcacgacggcatgttcctcgcgtcgggcagcgaagacccgtgcatt
cccattttgcacgtgccgacgggcgagctcgccttctcgatcggcatgaccgactcgccg
cagcagatcgcgtggcacccggccaagcccgtgctcgcgtacgtcggcgacaagggcgcg
ctcgaaaagaacaaggatcgactgggcgcgatcaagctcgtctcgttaaaggcgccgtaa

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