Saprolegnia parasitica: SPRG_14450
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Entry
SPRG_14450 CDS
T04137
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spar
Saprolegnia parasitica
Pathway
spar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPRG_14450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spar03019
]
SPRG_14450
03041 Spliceosome [BR:
spar03041
]
SPRG_14450
03009 Ribosome biogenesis [BR:
spar03009
]
SPRG_14450
03016 Transfer RNA biogenesis [BR:
spar03016
]
SPRG_14450
Enzymes [BR:
spar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPRG_14450
Messenger RNA biogenesis [BR:
spar03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SPRG_14450
Spliceosome [BR:
spar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SPRG_14450
Complex C
U4/U6.U5 tri-SnRNP related factors
SPRG_14450
Ribosome biogenesis [BR:
spar03009
]
Eukaryotic type
Pre-60S particles
Helicases
SPRG_14450
Transfer RNA biogenesis [BR:
spar03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SPRG_14450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
24136255
NCBI-ProteinID:
XP_012208984
UniProt:
A0A067BU06
LinkDB
All DBs
Position
Unknown
AA seq
1010 aa
AA seq
DB search
MDDLDLFGAFDDAQTLSTAEQAALATAPTPTTAAPLKRKADEAALPATKRIQRPRDEVHC
ATGTQKKNLISFSALPPDYVAPTLPDDFVPAKTYPFTLDPFQQQSVDYIEKGESVLVSAH
TSAGKTAVAEYAIAKSLRDKQRVIYTSPIKALSNQKYRDLEQEFGDVGLMTGDITINPTA
TCLIMTTEILRSMLYRGSEVMREVAWVIYDEIHYMRDKERGVVWEESIILLPHKVRFVFL
SATIPNSKEFASWICHIHHQPCHVVYTDYRPTPLQHYVFPAGGDGLHLVVDEKGKFREDN
FQKAMATLSASMEPEPADQSAAKKGAKKTGGNPKKKIGADVFRIVKLVMERQYDPVIIFS
FSKRECEAYALLLSKLDFTTDEEKTMVDQVFKNAIDSLSDDDKSLPQVDSILPLLRRGIG
IHHGGLLPILKEVIEIMFGEGLLKCLFATETFSMGLNMPAKTVVFTNCRKYDGNDFRWIT
SGEYIQMSGRAGRRSKDARGIVIQMLSDKMEPQVAKGILYGQADPLFSSFHLGYNMLLNL
LRVEDANPEYMIKQSFHQFQNEQAAPGLEDALARVLEEKDAIEIPNEPEVAEYYYLSKSV
AKYADDLRAIRNEPKYIVPFLNAGRLVKVHSTSAPWDYGVIVNFESGIKTNPDAAQASDT
ATVVHVLLNCRAGVDKAEPEPAAPGAWTHRESEMKICPVPLARIDVLSSLRVYIPKDLRP
LDARVAVAKSLAEVMRRFPQGVPLLDPIEDMAIEDPAFKKLVAKANDAQASMLASPIHAE
PGSRFALYSEKMECEAKVRELERQIKDSQTLVLKDDLRRRKRVLRRLEFVTADNVIGRKG
RTACEVSTADELLVTELIFNGAFNDLGVKETVALLSCLINTEKVKDGQKPPTAEALEAPV
RTLRDTARRVAKTMQDANITIDVEEYAASFNTNMVDVLIAWCEGAKFSQICKMTDQFEGS
IIRLIRRLEELLRQLTLAAHSIGNAELEAKFEEGGKKIKRDIVFAASLYL
NT seq
3033 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctcgacctctttggcgcctttgacgacgcgcagacgctgtcgacggccgag
caggccgcgctggcgacggcgccgacgccgacgacggccgcgcccttgaagcgcaaggcc
gacgaggctgcgctgccagctacgaagcgcatccaacgcccaagggacgaggtgcactgc
gcgacgggcacgcagaagaagaacctcatctcgttctcggcgctgccgccggactacgtg
gcgccgacgctgccggacgactttgtgccggccaagacgtatccgttcacgctggatccg
ttccagcagcagtcggtcgactacattgagaagggcgagagcgtcctcgtctcggcgcac
acgtcggccggcaagacggccgtggccgagtacgcgatcgccaagtcgctgcgtgacaag
cagcgcgtcatctacacgtcgccgatcaaggcgctgtcgaaccaaaagtaccgcgacctc
gagcaagagtttggcgacgtgggcttgatgacgggcgacattacgatcaacccgacggcc
acgtgcctcatcatgacgaccgagattctgcgctcgatgctctaccgcgggtccgaagtc
atgcgcgaggtggcgtgggtcatttacgacgagatccactacatgcgtgacaaggagcgt
ggtgtggtgtgggaggagagtatcatcctcctcccgcacaaggtccggttcgtctttctc
tcggcgacgattcccaactcgaaggagtttgcgtcgtggatctgccacatccaccaccag
ccgtgccacgtcgtgtacacggactaccgcccgacgccactgcagcactatgtgtttccc
gcgggcggcgacggtctccacctcgtcgtcgacgagaagggcaagttccgcgaagacaac
ttccagaaagcgatggcgacgctctcggcgtccatggagcccgagccggccgaccaaagt
gccgccaaaaagggcgcgaaaaagacgggcggaaacccgaaaaagaagattggcgccgac
gtcttccgcatcgtcaagctcgtcatggagcggcagtacgacccggtcattatcttctca
ttctccaagcgcgagtgcgaagcctatgcgctcctcctctcgaagctcgactttacgacc
gacgaagagaagaccatggtcgaccaagtgttcaagaacgcgatcgactcgctcagcgac
gacgacaagagccttccgcaggtcgactcgatcctgccgctcttgcgtcgtggcattggg
attcaccacggcggcctccttccgatcctcaaggaagtcatcgagatcatgtttggcgaa
ggcctcctcaagtgcctctttgcgaccgagacgttctcgatgggcttgaacatgccggcc
aagacggtcgtcttcacgaactgccgcaagtacgacggcaacgactttcgctggatcacg
tcgggcgagtacattcaaatgtcgggccgcgccggtcgtcgctcgaaggatgcgcgcggt
atcgtcatccaaatgctctcggacaagatggagccgcaggtcgcgaaaggcattctgtac
ggccaagccgacccgctcttttcgagcttccatctcggctacaacatgctcctcaacttg
cttcgggtcgaagatgccaaccccgagtacatgatcaagcagagtttccaccagttccag
aacgaacaagccgcgcccggcttggaagacgcgctcgcccgcgtcctcgaagagaaggac
gcgatcgagattcccaacgaacccgaagtcgccgagtactactacctctccaagagcgtc
gccaagtacgccgacgacctccgcgcgatccggaacgagcccaagtacattgtgcccttc
ttgaacgccggccgcctcgtcaaggtccacagcacgagcgctccttgggactatggcgtc
attgtcaactttgagtcgggcatcaagaccaacccggacgccgcgcaagcgtccgacaca
gcgaccgtcgtccacgtgctcctcaactgccgcgccggcgtcgacaaggctgagcctgaa
cccgcggcgccgggtgcctggacgcaccgcgagtcggagatgaagatctgccccgtgccg
ctggcgcgcatcgatgtgctctcgtcgctccgtgtgtacattcccaaggacctccgcccg
ctcgacgcgcgcgtcgccgtcgccaagtcgctcgctgaggtcatgcgccggttcccgcag
ggcgtgccgctcctggatccgatcgaggacatggcgatcgaggacccggccttcaagaag
ctcgtcgccaaggccaatgacgcgcaggcgtcgatgctcgcgtcgccgatccacgccgag
ccgggctctcgctttgccttgtactcggagaagatggagtgcgaagccaaggtgcgcgag
ctcgagcgccagatcaaggactcgcagacgcttgtgttgaaggacgatctccggcgccgg
aagcgcgtgctccgccggctcgagtttgtcacggccgacaacgtcattgggcgcaagggc
cggacggcgtgcgaggtctcgaccgccgacgagcttctcgtgacggagctcatcttcaac
ggcgcgttcaacgacctcggcgtcaaggagacggtcgcgctcctgagttgcttgatcaac
acggaaaaggtcaaggacgggcaaaagccgccgaccgccgaagcgcttgaggcacccgtg
cgcacgctgcgcgacacggcccgccgcgtggccaagacgatgcaggacgccaacatcacg
atcgacgtcgaggagtacgcggcgtcgttcaacaccaacatggtcgacgtcctcatcgcg
tggtgcgaaggcgccaagttcagtcagatctgcaagatgaccgaccagttcgagggctcg
atcatccgtctcattcggcgcctcgaagagctccttcggcagctcacgctggccgcgcac
tcgattggcaacgccgagctcgaggccaagttcgaagaaggcggcaagaagatcaagcgc
gatatcgtctttgcagcctcgctctacttgtaa
DBGET
integrated database retrieval system
