Staphylococcus pasteuri: STP1_0250
Help
Entry
STP1_0250 CDS
T02889
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spas
Staphylococcus pasteuri
Pathway
spas03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
STP1_0250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spas03400
]
STP1_0250
Enzymes [BR:
spas01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
STP1_0250
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
STP1_0250
DNA repair and recombination proteins [BR:
spas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
STP1_0250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
TraI_2B
Zn_ribbon_Nudix
Zn_ribbon_8
Zf_2nd_IFT121
DZR
Zn_Tnp_IS91
Motif
Other DBs
NCBI-ProteinID:
AGZ24561
LinkDB
All DBs
Position
complement(279472..280344)
Genome browser
AA seq
290 aa
AA seq
DB search
MPELPEVEHVKRGIEPYAVNTTINKITFSENVKKGKEDGRETIIKGMTLESFQRLTEGYT
ITKIERRSKYIVFYINRDEEQRILISHLGMAGGFFVVDHLEQINVPNYRKHWQVIFELDN
GKKLIYSDIRRFGEIRNVSSFDSYPSFLSIAPEPFDEEALQHFLDCTNKKNYAKKPIKQV
ILDHKVISGCGNIYACEALFRAGILPSRLTQDLSHQEKEMVFYHVRSVLNEGIKYGGTSI
SDYRHADGKTGEMQLHLNVYKQKYCKVCGHSIETQVIASRNSHYCPTCQK
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaagtagaacatgttaaaagaggaattgaaccatatgccgtaaat
actacgattaataaaataactttttctgaaaatgtaaaaaaaggtaaagaagatggacga
gagacgattatcaaaggaatgacactcgaaagttttcaacgcctaacagaaggttataca
attaccaaaattgagcgaagaagtaaatatattgtattttatattaatcgtgatgaagaa
caacgtattttaattagtcatctaggtatggcaggtggtttcttcgtagttgaccattta
gaacaaattaatgtgcctaattatcgtaagcattggcaagttatttttgaattagacaat
ggtaaaaaattaatttattcagatattcgtcgctttggggaaattagaaatgtgagtagc
tttgactcatatccttcatttttgagcatagctccggaaccctttgacgaagaagcactg
caacattttttagattgtacgaataaaaagaattatgctaaaaaaccgattaaacaagtg
attttagatcataaagttatatctggctgtggaaacatttatgcatgtgaagcgctattt
agagccggtattttacccagtcgactaacacaagatttatcacatcaagaaaaagaaatg
gtattttatcatgttcgatctgtattaaatgagggtattaaatacggaggaacgagcatt
tccgattatcgtcatgctgatggcaaaacaggtgaaatgcagttacatctgaatgtatat
aaacaaaaatattgcaaggtatgtgggcattcaattgaaactcaagtcatcgcatctaga
aatagtcactattgcccgacttgtcagaaataa
DBGET
integrated database retrieval system
