Sphingomonas paucimobilis: DRN02_003490
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Entry
DRN02_003490 CDS
T06034
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spau
Sphingomonas paucimobilis
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spau03016
]
DRN02_003490 (rnd)
Enzymes [BR:
spau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DRN02_003490 (rnd)
Transfer RNA biogenesis [BR:
spau03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DRN02_003490 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QBE93883
LinkDB
All DBs
Position
766576..767754
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AA seq
392 aa
AA seq
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MHVHPLITDSATLANLCARLSQADFITVDTEFMRESTYWPELCLIQIADTQEAAAIDPKA
PGLDMTPLLDLLVNNDEVLKVFHAGGQDIEIIYNLTGKTPHPLFDTQIAAMALGQGEQIG
YSNLVDSWLGIQVDKGARFTDWSRRPLDQRQVDYAIGDVTHLSDIFPRMLERLRKTGRGA
WLDQEMERLADPEHYANDPNSAWKRVRVSGRKPDMLGRMKALARWRELEAQAKDLPRGRI
VKDETLADLAGHPPRKQADLAKVRGLSATWATNDIGGRLMDALEAATPLSVDELPARDDR
KPGLGREGALVADLLKLLLKIRARDIDVAPRLLARSDDLEMLAAGVRSGLSVLDGWRFDQ
FGRDALDLVEGRLGFVVKNGKLKMVRTEEEVA
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtccatccgttgattaccgacagcgccacgctcgccaatctctgcgcccgcctt
tcgcaggccgacttcatcacggtcgatacagagttcatgcgcgagagcacctattggccc
gagctctgcctgatccagatcgccgacacacaggaagccgccgcgatcgatcccaaggcc
cctggcctagacatgacgccgctgctcgacctgctggtcaataatgacgaggtgctcaag
gtctttcatgccggcgggcaggatatcgagatcatctacaacctgaccggcaagacccct
cacccgctgttcgacacacagatcgctgccatggcgctggggcaaggcgagcagatcggc
tattccaatctggtcgacagctggctgggtattcaggttgacaagggcgcgcgcttcacc
gactggtcgcgccgcccgctcgaccagcggcaggtcgattatgcgatcggcgatgtgacg
catctgtcggacatctttccccggatgctggaacggctgcgcaagaccgggcgcggcgcg
tggctggaccaggagatggagcggctcgccgatcccgaacattatgccaatgatcctaat
tccgcctggaagcgggtgcgggtgtcggggcgcaagcccgacatgctcggccggatgaag
gcgctcgcccgctggcgcgaactggaggcgcaggccaaggatttgccgcgcggccgtatc
gtcaaggacgagaccctggccgacctcgccggccatcccccacgcaagcaggccgatctg
gccaaggtgcgcggcctctccgcgacctgggcgaccaatgatatcggcggccgcctgatg
gacgcgctggaggcggcgacgccgctcagcgtcgacgaactgcccgcgcgcgacgatcgc
aagccaggcttgggccgtgagggggcgctggtcgccgatttgctcaagctgctgctcaag
atccgtgcgcgcgacatcgacgtagccccgcgtctgctcgcccggtcggacgatctggaa
atgctggcggcgggcgttcgcagcggactgtcggtgctcgatggctggcgtttcgatcag
ttcggccgggacgcgttggatctggtcgagggacggctgggcttcgtcgtcaagaacggc
aagctgaagatggtccgtaccgaggaggaagtcgcgtga
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