Sphingomonas paucimobilis: DRN02_004995
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Entry
DRN02_004995 CDS
T06034
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spau
Sphingomonas paucimobilis
Pathway
spau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DRN02_004995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spau03400
]
DRN02_004995 (mfd)
Enzymes [BR:
spau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DRN02_004995 (mfd)
DNA repair and recombination proteins [BR:
spau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DRN02_004995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QBE91450
LinkDB
All DBs
Position
1079590..1083057
Genome browser
AA seq
1155 aa
AA seq
DB search
MPDIKTILTAQSPLTLSGVPAGFLPVLLADLARAATTRAVFVCADEAQMRELASTATYFA
PELEVLQIPAWDCLPYDRASPTLRVMAERIAGLHRLQAKPKTPQLVLTTANAATQRVLTP
FRIRQLVARLAPGERIGLEKLSTLLQANGYVRTETVHDQGEFAVRGGLVDLFPSGEEQAL
RLDFFGDEIESVRTFDPSDQRTTGRIDGFTLLPASEALLDEESIKRFRTRYRETFGATAT
GDPLYQAVSEGRRMAGMEHWLPLFEDKLSTLFDHLGDGAVVVRDNGVAAAASGRFDAIAD
YYENRKRAEAAQPGSFRPLPAKSLYLTPKEWDAGLEAATAHLVSPFHEPESATVFDFEVD
GARDFAPERAAHANIYEAVVDHVEALRKDGRKPVLASYSNGARERLGSLLKDHGLKGAKA
AETWQDALGIADTSKSFGVALVVLPLDHGFTAPGIAVLTEQDMLGDRLVRRQKRRKSADA
FLAELATLSPGDLVVHSDHGIGRYEGLTSIPVGKSPHDCVALSYAGGDKLYVPVENLEVL
TRYGSGEDGATLDRLGGEAWQRRKSKMKERIREIAGELIATAAERALRPGEVAEPDSAGY
PAFVDRFPYEETDDQDRAIDDVLGDLTAGKPMDRLVVGDVGFGKTEVALRAAFVAAMAGM
QVAVVCPTTLLARQHYNNFLARFEGFPIKIGRLSRLVTASEAKKVKDGAASGDIDIVVGT
HALLAKNVEFKRLGLVIVDEEQRFGVTHKERLKALKADVHMLTLTATPIPRTLQMAMSGL
RELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFLVTPRVADLPDIEEYLR
KEVPEVRYVVAHGQMSPTEVEERMSAFYDRKFEVLVSTTIIESGIDIPSANTMIVNRADR
FGLAQLYQLRGRVGRSKTRAYAYMVTPPERMMTEAAEKRLKVLSDLDSLGAGFQLASHDL
DIRGAGNLLGDEQSGHIKEVGYELYQSMLEEAILEAKAGGAFEPKRDFSPQITVDAPILI
PDDYVPDLDLRMGLYRRLNDLEKNQEVEAFAAEMIDRFGPLPEPTDNLIQVIKIKLNAKK
ACIAKMDVGPRGVLVTFHDNRPANVERLFAYVERLGELAKLRPDGKLVLNRAWPDAKARL
HGALQLSKGLAKSAG
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatatcaagacgatcctgaccgcccagagcccgctgaccctgtcgggcgttccg
gcagggttcctgcccgtgctgctcgccgatctggcgcgcgccgcgaccacgcgcgcggtc
ttcgtctgcgccgacgaagcgcagatgcgcgaactcgcctcgaccgcgacctatttcgcg
cccgagctggaggtgttgcagatccccgcctgggactgcctgccctatgaccgcgcctcg
ccgaccttgcgcgtcatggcggagcggatcgcggggctgcaccggttgcaggccaagccc
aagacgccgcagctcgtcctgaccaccgccaatgccgcgacccagcgggtgctgacgccg
ttccgcattcgccagcttgtcgcccgcctcgcacccggcgagcggatcggactggagaag
ctgtcaacgctgctccaggccaacggctatgtccgcaccgagacggtccacgaccaaggc
gaattcgcggtgcgcggcggcctggtcgacctgttccccagcggcgaggaacaggcgttg
cggctcgatttcttcggcgacgagattgagagcgtccgcaccttcgatccctccgaccag
cggacgacggggcggatcgacggcttcaccctgctccccgcctccgaagcgctgctcgac
gaggaatcgatcaagcgcttccgcacccgctaccgcgagacctttggcgcgaccgcgacc
ggcgacccgctctatcaggcggtttcggaggggcggcgcatggcgggcatggagcattgg
ctcccgctgttcgaggacaagctctcgacgctgttcgaccatctcggcgacggtgcggtg
gtcgtgcgcgacaatggcgtcgcggcggcggccagcggccggttcgatgcgatcgccgac
tattatgagaaccgcaaacgcgccgaggcggcgcaaccggggagcttccgcccccttccc
gccaagtcgctctacctgacgcccaaggaatgggatgccgggctggaggccgcgaccgcg
catctggtgtcgccgttccacgaaccggaaagcgccaccgtgttcgatttcgaggtggac
ggcgcccgcgacttcgcccccgaacgcgcggcgcacgccaatatctatgaggcggtggtc
gatcatgtagaggcgcttcgcaaggacggtcgcaagcccgtcctcgccagctattccaac
ggcgcgcgcgagcgtctggggagcctgctcaaggaccatggcctgaagggcgcgaaggcc
gccgagacctggcaggacgcgctgggcattgccgatacgtcgaagagcttcggtgtcgcg
ctggtcgtgttgccgctcgaccatggcttcaccgcgcccggaatcgcggtgctgaccgag
caggacatgctcggcgaccggctggtccggcgacagaagcggcgcaaatcagccgatgcc
ttcctggccgaactggcgacgctctcgcccggcgatctggtggtgcactccgaccatggt
atcggccgttatgaggggctgacctcgatcccagtcggcaagagcccgcatgactgcgtc
gcgctatcctatgcgggcggcgacaagctctatgtcccggtcgaaaacctcgaagtcctg
acccgctatggctcgggcgaggacggggcgacgctcgaccgtctgggcggcgaggcgtgg
cagcgtcgcaagtcgaagatgaaggagcgcatccgcgagatcgcgggtgagctgatcgcc
accgccgccgaacgcgcgctgcgccccggcgaagtggccgagcccgacagcgcgggctat
ccggcattcgtcgaccgcttcccgtacgaggaaaccgacgatcaggaccgggcgatcgac
gatgtgctgggcgacctgaccgcgggcaagccaatggaccggctggtcgtcggcgatgtc
ggcttcggcaagaccgaggtggcgttgcgcgccgccttcgtcgcggcgatggcggggatg
caggtggcggtggtctgcccgaccaccctgctcgcccgccagcattacaacaatttcctg
gcccggttcgagggcttcccgatcaagatcggccgcctttcccgcctcgtcaccgcgagc
gaggcgaagaaggtcaaggacggcgcggcctcgggcgatatcgacatcgtcgtcggcacc
catgcgctgctcgccaagaatgtcgagttcaagcggctgggcctcgtcatcgtcgacgag
gagcagcggttcggcgtgacgcacaaggaacggttgaaggcgctcaaggccgacgttcat
atgctgacgctgaccgcgacgccgatcccgcgcacgctgcaaatggcgatgtcgggtctg
cgcgaactgtcggtgatccagacgccgccggtcgaccgcctcgcggtgcgcacctatgtc
atgccctgggacccggtggtgctgcgcgaagccttgctccgcgagcattatcgcggcggg
cagagcttcctcgtcaccccgcgcgtcgccgacctgccagatatcgaggaatatctgcgg
aaagaggtgcccgaggttcgctatgtcgtcgcgcacggccagatgtcgcctacggaagtc
gaagagcgcatgtcggccttttacgaccgcaagttcgaggtgctggtatcgaccaccatc
atcgaaagcggcatcgacattccctcggccaacacgatgatcgtcaaccgcgccgaccgt
ttcggcctggcccagctctatcagttgcgcggccgcgtcggccggtcgaagacgcgcgcc
tatgcctatatggtcacgccgcccgagcggatgatgaccgaggcggcggagaagcggctg
aaggtcctgtccgacctcgactcgctgggcgcaggcttccagttggccagtcacgacctc
gatattcgcggggcgggcaatctgctcggcgacgaacagtcggggcatatcaaggaggtc
ggctacgaactctaccagtcgatgctggaagaggcgatcctggaggccaaggccggcggc
gcgttcgagcccaagcgcgatttcagccctcagatcaccgtcgatgcgccgatcctgatc
cccgacgattacgtccccgatctcgacctgcgcatggggctgtatcgtcgcctcaacgat
ctggaaaagaaccaggaggtcgaggccttcgccgccgagatgatcgaccgcttcggcccc
ctgcccgagccgaccgacaatctcatccaggtcatcaagatcaagctgaacgccaaaaag
gcctgtatcgccaagatggatgtgggcccgcgcggggtgctggtgaccttccacgacaat
cggcccgccaatgtcgagaggctgtttgcttatgtcgagcggctgggcgaactcgccaag
ctgcgccccgacggcaagctggtgctcaaccgcgcctggcccgatgccaaggctcggctg
cacggcgcgctgcaattgtcgaaagggctggccaagtcggcgggatag
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