Sphingomonas paucimobilis: DRN02_010165
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Entry
DRN02_010165 CDS
T06034
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spau
Sphingomonas paucimobilis
Pathway
spau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DRN02_010165 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spau03021
]
DRN02_010165 (rpoC)
03400 DNA repair and recombination proteins [BR:
spau03400
]
DRN02_010165 (rpoC)
Enzymes [BR:
spau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DRN02_010165 (rpoC)
Transcription machinery [BR:
spau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DRN02_010165 (rpoC)
DNA repair and recombination proteins [BR:
spau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DRN02_010165 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QBE92348
LinkDB
All DBs
Position
complement(2159066..2163352)
Genome browser
AA seq
1428 aa
AA seq
DB search
MNELTNFANPVAKPETFDQIQIGIASPDKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVIEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVRIMLESLDLEGERVQLLEELATTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEKQNEPGEGMMLADMEEVHQALFA
GAVTLHTKIVSRVPQTDEQGNQYLKRYETTPGRMLLGECLPKSHKVPFDVVNRVLTKKDV
GEVIDEVYRHTGQKETVLFADAIMALGFRHAFRAGISFGKDDMIIAPDKDRLVDETREQV
KDFEQQYQDGLITQQEKYNKVIDAWSRCGDQVANSMMNEIKAVRHYEDGPMEGREKPINS
IYMMAHSGARGSPAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARK
GLADTALKTANSGYLTRRLVDVSQDCVIIEEDCGTTRALEMKAIVQGGSTIASLGERILG
RTTAEDIVDTKSGEVIVASGVLLDEPMVAKIEAANTQAVKIRSPLVCESKIGVCGKCYGR
DLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAAVDGVVQFRD
LRLIVDQRGRRVVLSRSGEIAIVDMDGRELSVDRIPYGAYVLFDDGHIVSKGDRMAEWDP
FTMPVITENPGTVKFQDLVEGKTLTEQVDEATGIAQRVVTEYRASTKSKEDLRPRMTLLD
DNSGEAGRYMLAPGATLSVEDGAQVQGGDVLARVARESAKTRDITGGLPRVAELFEARVP
KDSAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNL
IGGSPDPHDILETMGVEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITDGG
DTTLLKGEQVDREEMDAINDKLDANQVRAQGKPVLLGITKASLQTRSFISAASFQETTRV
LTEAAVQGKQDTLMGLKENVIVGRLIPAGTGAGMNRLRVAASSRDAALRAQQRKLAEAII
APVSAAEQRAAENARSPRDDAGTGSDPLAEVVPSGQGTDADAGEYLND
NT seq
4287 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaacttcgccaatccggtggccaagccggaaaccttcgaccagatt
cagatcggtatcgcgtcgcccgacaagatccgttcctggtcgttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagccggaacgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcttgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggtgtcgaagtcacggtgtcgaaggtccgccgcgag
cggatgggccatatcgaactggccgcccccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctactcgacatgcagctcaagcagctcgagcgcgtgctgtac
ttcgaggcctatatcgtcatcgagccgggcctgaccccgctggagaagtatcagcttctc
accgaggacgaactgctcgacgcgcaggatgaatatggcgaggacgccttctccgccggc
atcggcgcggaagcggtccgcatcatgctcgagagcctcgacctcgagggcgagcgcgtg
cagcttctggaagagctggcgacgaccaagtcggagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgagagcttcatcgaatcgggcaaccgccccgagtggatgatcctc
gaagtgatcccggtcatcccgcccgagctgcgcccgctggtgccgctggacggtggccgt
ttcgcaacctcggacctgaacgatctgtatcgccgcgtcatcaaccgcaacaaccgcctg
aagcgcctgatggagctgcgtgcgccggacatcatcgtccgcaacgaaaagcgcatgttg
caggaagcggtcgacgcgctgttcgataacggccgtcgcggtcgcacgatcacgggtgcc
aacaagcgtccgctgaagtcgctgtccgacatgctgaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggtccg
gagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaagccg
ttcatttatgcccgtctggacgccaagggtctgtcgatgaccctgaagcaggccaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctggacgaggtgatccgcgagcac
ccggtcatgctgaaccgcgcgccgacgcttcaccgtctgggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagcttcacccgctggtctgctcggcgttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtcccgttgtcgctcgaagcgcagctggaa
gcgcgcgtcctgatgatgtcgactaacaacatcctgtcgcccgcgaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctgggcctctattacctgtcgctcgaaaagcagaac
gagccgggcgagggcatgatgctggccgacatggaggaggtccaccaggccctcttcgcc
ggtgccgtcacgctgcataccaagatcgtcagccgcgttccgcagaccgacgagcagggc
aaccagtatctcaagcgctatgagaccaccccgggtcgcatgctgctgggcgagtgcctg
cccaagagccacaaggtgcccttcgacgtcgtcaaccgcgtcctgaccaagaaggacgtg
ggcgaggtgatcgacgaggtgtatcgtcacaccggccagaaggagaccgtgctgttcgcc
gacgcgatcatggcgctgggcttccgtcacgcgttccgcgccggcatctcgttcggcaag
gacgacatgatcatcgcgccggacaaggatcgtctggtcgacgagacgcgcgagcaggtg
aaggacttcgagcagcagtatcaggacggcctgatcacgcagcaggagaagtacaacaag
gtgatcgacgcctggagccgttgcggcgatcaggtcgcgaactcgatgatgaacgagatc
aaggcggtccggcattacgaggatggcccgatggagggccgtgagaagccgatcaactcg
atctacatgatggcccactcgggcgcgcgtggtagccccgcgcagatcaagcagttggcg
ggtatgcgcggcctgatggccaagccgtcgggcgagatcatcgagacgccgatcatctcg
aacttcaaggaaggtctgaccgttcttgaatatttcaactcgacccacggcgcgcgtaag
ggtctggccgacacggcactgaagacggcgaactcgggttacctgacccgccgtctggtc
gacgtcagccaggactgcgtcatcatcgaagaggattgcggcaccacccgcgccctcgag
atgaaggcgatcgtgcagggcggttcgaccatcgcgtcgctcggcgagcgtatcctgggc
cgcaccacggccgaggacatcgtcgacaccaagtccggtgaggtcatcgtggcatcgggc
gtgctgctcgacgagccgatggtggccaagatcgaggcggcgaacacccaggcggtcaag
atccgcagcccgctggtctgcgaatcgaagatcggcgtctgcggcaaatgctatggccgt
gacctcgctcgcggtacgccggtgaatatcggcgaagcggtcggcgtcatcgcggcgcag
tcgatcggtgagccgggcacgcagctgaccatgcgtaccttccacatcggtggtgcggcg
cagctgaacgagcagtcgaacctggaagcggcggtggacggtgtcgtccagttccgtgac
ctgcgcctgatcgtcgaccagcggggccgtcgcgtggtgctgagccgttcgggtgagatc
gcgatcgtcgacatggacggccgcgaactgtcggtcgaccgtatcccctacggtgcctat
gtcctgttcgacgatggtcacatcgtgtcgaagggcgaccgcatggccgaatgggacccg
ttcaccatgccggtgatcacggaaaacccgggtacggtgaagttccaggaccttgtcgaa
ggcaagaccctgaccgagcaggtcgacgaagccacgggtatcgcccagcgcgtcgtcacc
gaatatcgcgcctcgaccaagtcgaaggaggatctgcgtccgcgcatgaccctgctcgac
gacaattcgggtgaggccggtcgctacatgctggcgccgggtgcgacgctctcggtcgag
gacggggcgcaggtgcagggcggtgacgttctggcccgtgtggcgcgcgagtccgccaag
acccgcgacatcaccggcggtctgccgcgcgtcgccgagctgttcgaagcacgcgtgccg
aaggactcggcgatcatcgccaaggtctcgggtcgtgtcgtgttcggcaaggactacaag
gcgaagcgcaagatcggcatccagcccgaggatggcggcgaggtcgtcgagtatctggtg
cccaagtcgaaggtgatcgacgttcaggaaggcgactacgtcaagcgtggcgacaacctg
atcggcggctcgcccgatccgcacgacattctggaaacgatgggcgtggagccgctggcc
gaatatctggtcagcgaaatccaggaagtgtatcgcctccagggcgtgaagatcaacgac
aagcacatcgagacgatcgttcgtcagatgctgcagaaggtcgagatcaccgatggcggc
gacaccacgctgctgaagggcgagcaggtcgatcgcgaggaaatggacgcgatcaacgac
aagctcgacgcgaaccaggtccgggcccaaggcaagcccgttctgctcggcatcaccaag
gcgtcgctgcagacccgcagcttcatctcggcggcgtcgttccaggagaccacccgcgtc
ctcaccgaggcggcggtccagggcaagcaggacacgctgatgggcctgaaggagaatgtc
atcgtcggccgcctgatcccggcgggtaccggtgcgggcatgaaccgcctgcgcgtggcg
gcctccagccgcgatgccgcgctccgcgcgcagcagcgcaagctggccgaggcgatcatc
gcgccggtcagcgcggccgagcagcgggcggcggaaaacgcccgttcgccgcgtgacgat
gcgggcacgggcagcgatccgctggccgaggtcgtgccgtcgggccagggtactgacgcc
gatgccggcgagtatctgaacgactga
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integrated database retrieval system
