Sphingomonas paucimobilis: DRN02_010495
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Entry
DRN02_010495 CDS
T06034
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spau
Sphingomonas paucimobilis
Pathway
spau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DRN02_010495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spau03019
]
DRN02_010495
03009 Ribosome biogenesis [BR:
spau03009
]
DRN02_010495
Enzymes [BR:
spau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DRN02_010495
Messenger RNA biogenesis [BR:
spau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DRN02_010495
Ribosome biogenesis [BR:
spau03009
]
Prokaryotic type
rRNA processing factors
DRN02_010495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
KH_1
Anti-TRAP
CHP02642
Motif
Other DBs
NCBI-ProteinID:
QBE94042
LinkDB
All DBs
Position
2237803..2240448
Genome browser
AA seq
881 aa
AA seq
DB search
MLIDARHREETRVAVVKGNRIEEFDFESAERKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPKEDREALLREEAEHAAEEAALRAELDAEDDEDHDGEDHDDHA
DDHHDDEDGEGAPRPKKSTVNDDQVEALRQRRQNLRRRYKIQDVIHRRQVLLVQIVKEER
GNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRLKTIMAEMALPSTMGCIV
RTAGLQRTKTEIKRDFDYLARLWDGIREKTLHSSAPTLIYGDSDLIKRAIRDIYNREIEE
VIVEGEEGYRQAKDFMRLLMPAHARRVKQYADAVPLFQRAHVEDQLAAMYNPVVQLKSGG
YLVINPTEALVSIDINSGRSTREHNIEQTATATNLEAAQEIARQLRLRDMAGLVVIDFID
MDNNSNVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTRPCPHCEG
TGLVRTASSSGLSALRLIEDEAARGRGSILTLRASQEAAVYVLNRKRADIAEIEDRYGVT
VEIIPDREEEGARMTVEASGPPPAYAPKIDMLLPVEEDEDDLIDEIEEEEEEEVEEEATE
AASPREPREDGEGGGRKRRRRRRGRRNRGGAEGGEQAENEASADDAEFDEAESEESAEEE
VVEASEAEQAEPREGGRRRRGRRGRRGGRRGENGANEAGESAVEAESDDDQAEAPLSVAE
PIEAGDAAPVTTPLAVAEAEAAEAPKTRRRPRARKAAPAVTEATETPTEAPVAEAAPETP
AAEVEAEAPAKPKRTRKKAAPKVAAEPVAEEAPVAVEAEAAPAKPKRTRKKAAPKVAAEP
VAEEAPAEVETVTAEEPAAADAEAPTAETPRRGWWQRTFGA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcacgccaccgggaagaaacccgcgtggccgtcgtcaagggtaaccgg
atcgaggaattcgacttcgaatccgccgagcgcaagcagctcaagggtaatatctacctt
gccaaggtgacccgcgtcgaaccgtcgctgcaggcggcgttcgtcgattacggcggcaac
cgtcacggcttcctggccttttcggaaatccaccccgactattaccagatccccaaggaa
gatcgcgaagccctgctgcgcgaagaggccgagcatgccgccgaagaggcagcccttcgc
gccgagctcgacgccgaggacgatgaggatcatgacggcgaggatcatgacgatcacgcc
gacgaccatcacgacgatgaggacggcgaaggcgcgccgcgcccgaagaagtcgaccgtc
aatgacgaccaggtcgaggcgctgcgccagcgtcgccagaatctgcgccgccgctacaag
atccaggacgtcatccatcgccgccaggtgctgctggtccagatcgtcaaggaagagcgc
ggcaacaagggcgcggcgctgaccacctatttgtcgctggcgggtcgctactgcgtcctg
atgcccaacacgagccacggcggcggcatcagccggaagatctcgaacgcggccgaccgc
aagcggctgaagaccatcatggccgagatggcgctgccctcgaccatggggtgcatcgtc
cgcaccgccgggctccagcgcaccaagaccgagatcaagcgcgacttcgattacctcgcc
cgcctgtgggacggtatccgtgaaaagacgctgcattcgtcggcgcccacgctgatctat
ggcgacagcgacctgatcaagcgtgcgatccgcgacatctacaatcgcgagatcgaggaa
gtgatcgtcgagggcgaggaaggctatcgccaggcgaaggacttcatgcgcctgctgatg
cccgcgcacgcccgccgggtgaagcagtacgccgacgccgtcccgctgttccagcgcgcg
catgtcgaggaccagctcgccgcgatgtacaatccggtcgtccagctgaagtcgggcggc
tatctggtcatcaacccgaccgaagcgctcgtctcgatcgacatcaactcggggcgttcg
acccgcgagcataatatcgagcagaccgcgaccgcgaccaacctcgaagccgcgcaggaa
atcgcgcgtcagctccgcctgcgcgacatggcgggtctggtcgtcatcgacttcatcgac
atggacaacaactccaatgtccggaaggtcgagaaggcgatgaaggaggcgctgaagaac
gatcgcgcccgcatccaggtcggccgcatctcgtccttcgggctgatggaaatgagccgc
cagcggctgcgcaccggcgtgctcgaagcctcgacccgcccctgcccgcattgcgaaggc
accggcctggtccgcaccgcgtcgtcgtcgggcctgtcggcgctgcgcctgatcgaagac
gaagccgcgcgcggtcgcggctcgatcctgacgctgcgcgccagccaggaagccgccgtc
tatgtgctgaaccgcaagcgtgccgacatcgccgagatcgaggatcgttacggcgtcacc
gtcgagatcatccccgaccgcgaggaagagggtgcgcgcatgacggtcgaggcctcgggc
ccgccgccggcctatgcgcccaagatcgacatgctcctgcccgtcgaggaggatgaggac
gatctgatcgacgagatcgaagaggaagaagaggaagaggtcgaggaagaagcgaccgaa
gccgctagccctcgcgaaccgcgtgaagacggcgaaggtggtggtcgcaagcgccgtcgc
cgccgtcgtggccgtcgcaaccgtggcggagccgagggtggcgagcaggccgagaacgaa
gcatcggccgatgacgccgagttcgacgaggccgaaagcgaagagagcgccgaggaagag
gtcgtcgaagcgagcgaggccgagcaggccgaaccgcgagaaggcggtcgtcgtcgtcgc
gggcgtcggggtcgtcgtggcggtcgccggggcgagaatggcgcgaacgaagccggcgag
tccgcggttgaggccgagtcggatgacgatcaggccgaagcgccgctgtccgtcgccgag
ccgatcgaagcaggcgatgccgcgccggtgacgacgccgctggcggtcgccgaagccgaa
gcggccgaggcgcccaagacccgccgtcgcccgcgcgctcgcaaggccgcaccggccgtg
accgaggcgaccgagacgccgacggaagctccggtggccgaggctgcgccggaaacgcct
gcggccgaggtcgaagcggaagcgccggcaaagcccaagcgtacccgcaagaaggccgcc
cccaaggtcgccgccgagccggtcgccgaggaagcgcccgttgcggtcgaagcggaagcc
gccccggccaagcccaagcgcacccgcaagaaggccgcccccaaggtcgccgccgagccg
gtcgccgaggaagcgcccgccgaggtggaaaccgtgacggccgaggaaccggccgctgcg
gacgccgaagcccctaccgccgaaactccgcgtcgcggctggtggcagcggaccttcggc
gcctga
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