Sphingomonas paucimobilis: DRN02_013775
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Entry
DRN02_013775 CDS
T06034
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spau
Sphingomonas paucimobilis
Pathway
spau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DRN02_013775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spau03019
]
DRN02_013775
Enzymes [BR:
spau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DRN02_013775
Messenger RNA biogenesis [BR:
spau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DRN02_013775
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QBE92958
LinkDB
All DBs
Position
complement(2921322..2922701)
Genome browser
AA seq
459 aa
AA seq
DB search
MSFSELGLAEPLVRALEAKGYSEPTPIQRDSIPTLLEGRDLLGIAQTGTGKTAAFVLPSI
QRLVEANKRVLPTHCRMLVLAPTRELASQIADNAKGYAKFSKLAVATVFGGTSINKNRQD
LSRGVDILVATPGRLIDLVEQGFLNLSMIEILVLDEADQMLDLGFIHALRRIVKMIPRKR
QTLFFSATMPAAIRDLADKFLDNPATVSVTPVSTTAERVEQSVTFVTQQEKQALLTILLA
DPAIELALVFTRTKHGADRVVKLLAGNGIAANAIHGNKSQGQRERALGEFRSGQTRVLVA
TDIAARGIDIPGVSHVFNFELPNVAEQYVHRIGRTARAGRSGLAIAFCAEDERPYLKDIE
KLTRQKITVVPLPADFVKRAETIKSQRVKAIGADPAPRVDRPRDPARPRATHHPRATDAR
APQGRQPRRRSGSGGGGRGRGGGAGRPGGGGGAGRGAQG
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtccttttccgaactcggcctcgccgagccgctcgtccgcgcgctcgaagccaaaggc
tattccgaacccaccccgatccagcgcgactcgatcccgacgctgctggaaggccgcgat
ctgctcggcatcgcgcagaccggcaccggcaagaccgccgctttcgtcctcccttcgatc
cagcgtctggtcgaggcgaacaagcgcgtcctgccgacccattgccggatgctcgtcctc
gccccgactcgcgaactggccagccagatcgccgacaatgcgaagggctatgccaaattt
tccaagctggcggtcgcgaccgtctttggcggcaccagcatcaacaagaaccggcaggac
ctgtcgcgcggcgtcgacatcctggtcgcgacgcccggccggctgatcgatctggtcgag
cagggcttcctgaacctgtcgatgatcgagatcctggtgctcgacgaagccgaccagatg
ctcgacctgggcttcatccacgcgctgcgccgcatcgtgaagatgattccgcgcaagcgt
cagacgctgttcttctcggcgaccatgcccgccgcgatccgcgacctggccgacaagttc
ctcgacaatcccgcgaccgtctcggtcacgcccgtctcgaccaccgccgagcgcgtcgaa
cagtcggtgaccttcgtgacgcagcaggagaagcaggcgcttttgaccatcctgctcgcc
gatcccgcgatcgagctggcgctggtcttcacccgcaccaagcatggcgccgaccgcgtc
gtaaagctgctggcgggcaacggcatcgccgccaatgcgatccacggcaacaagagccag
ggccagcgcgagcgggcgctgggcgagttccggtcgggccagacccgcgtgctggtggcg
accgacatcgccgcgcgcggcatcgacattccgggcgtcagccacgtctttaacttcgag
ctgcccaatgtcgcggagcaatatgtccaccgcatcggccgcaccgcgcgggccggtcgc
tcgggtctggccatcgccttctgcgccgaggatgagcgtccgtatctgaaggatatcgag
aagctgacgcggcagaagatcaccgtcgtgccactgccggccgatttcgtgaagcgcgcc
gaaacgatcaagtcgcagcgcgtcaaggcgatcggtgccgatcccgcgccgcgcgtcgac
cgtccgcgtgatccggcgcgtccgcgcgcgacccatcatccgcgtgcgaccgacgcacgg
gcaccgcaggggcgccagccgcgtcgccggagcggctccggcggcggtggtcgcggccgt
ggcggcggtgcgggccgtcccggtggcggcggcggcgcaggtcgcggcgctcagggctga
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