Sphingomonas paucimobilis: DRN02_017675
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Entry
DRN02_017675 CDS
T06034
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spau
Sphingomonas paucimobilis
Pathway
spau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DRN02_017675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spau03019
]
DRN02_017675
03009 Ribosome biogenesis [BR:
spau03009
]
DRN02_017675
Enzymes [BR:
spau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DRN02_017675
Messenger RNA biogenesis [BR:
spau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DRN02_017675
Ribosome biogenesis [BR:
spau03009
]
Prokaryotic type
rRNA helicases
DRN02_017675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBE93623
LinkDB
All DBs
Position
3772508..3774250
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AA seq
580 aa
AA seq
DB search
MPFSALPPVLSAALSARGYAAPTPVQAAVIEDDAQGRDLIVSAQTGSGKTVAFGLAMASE
LLQGADHLPPAGAPMALVIAPTRELALQVSRELEWLYAGARARIATCVGGMDASRERRAL
NHGAHIVVGTPGRLRDHLERGALDLSSLKFVVLDEADEMLDMGFREDLEQILDATPTERR
TLLFSATMPRPIVQLAKRYQTNAKRIETISEDKGHADIAYQVVTVAPADIEAAVVNLLRL
HEAEVAILFCATRDNVRHLHASLVERGFSAVALSGEHSQNERNHALQALRDGRARVCVAT
DVAARGIDLPGLTLVIHVEIPRDAEALQHRSGRTGRAGRKGTAILIVPYPRRRRVEGMLR
GARIDAEWRRAPTLEEIREQDRERLLTALLAPVEVDEADRELATRLLAEKSAEDIAAALV
RAHRAALPQAEELVEGDAPPPRERREGFDDTVWFRMSVGRRQNADPRWLLPLICRRGHIT
RNEIGAIRIQPNETLFEVPTALASRFVAALKRTEADHAEDDIAIEQADGPPAGGASNGGP
RRGGPGGGRPMGGRPAGGPGGPRRYSPRPTQGGPRGPRRG
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgcctttttctgctttgccgccggtcctgtcggcagccctttccgcgcgtggctatgcc
gcgccgacccccgtccaggccgccgtcatcgaggatgatgcgcagggccgcgacctgatc
gtctccgcccagaccggttcgggtaagaccgtcgccttcggcctcgctatggcgagcgag
ctgcttcagggcgcggatcatctgcccccggccggcgcgccgatggcgctggtcatcgcc
ccgacccgcgaactggcgctgcaggtcagccgtgagctcgaatggctctatgccggcgcc
cgcgcgcgcatcgccacctgtgtcggcggcatggacgcctcgcgtgagcgtcgcgcgctc
aaccacggcgcgcatatcgtcgtcggcacgccgggtcgtctgcgcgatcacctcgagcgc
ggtgcgctcgacctgtcgtcgctgaagttcgtcgtgctcgacgaggcggacgagatgctc
gacatgggtttccgcgaggatctggaacagattctcgatgcgacgccgaccgagcgccgc
acgctcctgttctcggcgaccatgccgcgcccgatcgtgcagctcgccaagcgctaccag
accaatgccaagcggatcgagacgatcagcgaggataagggccatgccgacatcgcctat
caggtggtgacggtcgcccccgccgatatcgaggcggcggtggtcaacctgctgcgcctg
cacgaggccgaggttgcgatcctgttctgcgcgacccgcgacaatgtccgccacctgcac
gccagtctggtcgagcgcggcttctcggccgtggcgctgtcgggtgagcattcgcagaat
gagcgtaaccatgcgctgcaagcgctgcgtgacggccgcgcccgtgtctgcgtcgcgacc
gacgtcgcggcgcgcgggatcgacttgccgggactgacgctcgtcatccatgtcgaaatc
ccgcgcgatgccgaagcgctccagcaccgctcgggccgcaccggtcgcgcgggccgcaag
ggtaccgcgatcctgatcgtcccctatccgcgccgtcgccgcgtcgaggggatgctgcgc
ggtgcgcgaatcgatgccgaatggcgtcgtgcgccgacgctggaggaaattcgcgaacag
gatcgcgagcggttgctgaccgcattgctcgcccccgtcgaggtggacgaggccgatcgc
gaactggcgacgcgcctgctcgccgagaagtcggccgaggacatcgccgccgctttggtc
cgcgcgcaccgcgccgcgctgccccaggccgaggaactggtcgagggcgatgcaccgccg
ccgcgggagcgtcgcgagggcttcgacgacaccgtctggttccggatgagcgtcggccgc
cgccagaatgccgatccgcgctggctgctgccgctgatctgccgtcgcgggcacatcacc
cgcaacgagatcggcgcgatccgcatccagccgaacgagacgctgttcgaggtgccgacc
gcgctggcgtcgcgcttcgtcgccgcgctgaagcggaccgaggcggatcatgccgaggac
gatatcgcgatcgagcaggccgatggcccccccgccggtggcgcatcgaatggcggcccg
cgtcgcggtgggccgggcggtggtcgtccgatgggcggtcgtccggccggcggtcccggc
ggcccgcgccgctattcgccgcgcccgacgcagggcggcccgcgcggtccgcgtcgcggc
taa
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